Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01161 ATGCGAACGCTTTGTGATGCTTGTGAGAGCGCTGCCGCTATAGTTTTCTGTGCTGCTGATGAAGCTGCACTCTGTCGTGCTTGTGATGAGAAGGTTCATATGTGCAATAAGCTAGCTAGTAGACATGTTAGGGTTGGTCTTGCAAGTCCAAGTGATGTGCCGCGATGCGACATATGTGAGAATGCACCTGCTTTCTTTTATTGCGAAACAGATGGAAGTTCCCTTTGTTTGCAATGTGATATGATAGTTCATGTTGGTGGTAAAAGAACACATGGAAGATATCTTTTGTTTAGGCAAAGAGTTGAGTTTCCAGGTGATAAACCTAATAATGCAGACAACCCAGCTTCACAACCTTTGGATCCCGGCGATATTAAAAGAGGACAAAGTCCACTTCCCAAACAAAAATCGGGAGAGAAGCAACAAAATAATCACCGGATGCCTCCGGTTCCAACTTCAGAACCTGATGCTGGTGGAAATACTAAGATGGACAATAAATTGATTGATTTGAACATGAAGCCTAACAGAATACATGAACATGCATCAAATCATCAGGTTAGAGTTCATGCGAAGTAA 573 0.4206 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKPNNADNPASQPLDPGDIKRGQSPLPKQKSGEKQQNNHRMPPVPTSEPDAGGNTKMDNKLIDLNMKPNRIHEHASNHQVRVHAK 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01161 190 SMART bboxneu5 51 96 IPR000315 GO:0008270
Trre9g01161 190 SMART bboxneu5 1 47 IPR000315 GO:0008270
Trre9g01161 190 FunFam B-box zinc finger protein 19 2 92 - -
Trre9g01161 190 Gene3D Classic Zinc Finger 2 91 - -
Trre9g01161 190 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Trre9g01161 190 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Trre9g01161 190 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Trre9g01161 190 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 170 - -
Trre9g01161 190 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Trre9g01161 190 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Trre9g01161 190 MobiDBLite consensus disorder prediction 104 190 - -
Trre9g01161 190 CDD Bbox1_BBX-like 56 96 - -
Trre9g01161 190 MobiDBLite consensus disorder prediction 168 190 - -
Trre9g01161 190 CDD Bbox1_BBX-like 4 47 - -
Trre9g01161 190 MobiDBLite consensus disorder prediction 133 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01161 Trre-Chr9 9350838 9352210 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01161 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 60.656 1.67e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Trre9g01161 zf-B_box 2.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01161 - - gmx:100780544 341.273