Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01160 ATGCGAACGCTTTGTGATGCTTGTGAGAGCGCTGCCGCTATAGTTTTCTGTGCTGCTGATGAAGCTGCACTCTGTCGTGCTTGTGATGAGAAGGTTCATATGTGCAATAAGCTAGCTAGTAGACATGTTAGGGTTGGTCTTGCAAGTCCAAGTGATGTGCCGCGATGCGACATATGTGAGAATGCACCTGCTTTCTTTTATTGCGAAACAGATGGAAGTTCCCTTTGTTTGCAATGTGATATGATAGTTCATGTTGGTGGTAAAAGAACACATGGAAGATATCTTTTGTTTAGGCAAAGAGTTGAGTTTCCAGGTGATAAACCTAATAATGCAGACAACCCAGCTTCACAACCTTTGGATCCCGGCGATATTAAAAGAGGACAAAGTCCACTTCCCAAACAAAAATCGGGAGAGAAGCAACAAAATAATCACCGGATGCCTCCGGTTCCAACTTCAGAACCTGATGCTGGTGGAAATACTAAGATGGACAATAAATTGATTGATTTGAACATGAAGCCTAACAGAATACATGAACATGCATCAAATCATCAGCCATAG 558 0.4229 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKPNNADNPASQPLDPGDIKRGQSPLPKQKSGEKQQNNHRMPPVPTSEPDAGGNTKMDNKLIDLNMKPNRIHEHASNHQP 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01160 185 SMART bboxneu5 51 96 IPR000315 GO:0008270
Trre9g01160 185 SMART bboxneu5 1 47 IPR000315 GO:0008270
Trre9g01160 185 Gene3D Classic Zinc Finger 2 91 - -
Trre9g01160 185 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Trre9g01160 185 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Trre9g01160 185 MobiDBLite consensus disorder prediction 104 185 - -
Trre9g01160 185 CDD Bbox1_BBX-like 56 96 - -
Trre9g01160 185 MobiDBLite consensus disorder prediction 168 185 - -
Trre9g01160 185 FunFam B-box zinc finger protein 19 2 92 - -
Trre9g01160 185 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Trre9g01160 185 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Trre9g01160 185 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 170 - -
Trre9g01160 185 CDD Bbox1_BBX-like 4 47 - -
Trre9g01160 185 MobiDBLite consensus disorder prediction 133 148 - -
Trre9g01160 185 SUPERFAMILY B-box zinc-binding domain 48 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01160 Trre-Chr9 9349905 9352210 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01160 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 60.656 2.26e-75 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Trre9g01160 zf-B_box 2.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01160 - - gmx:100780544 343.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01160 9 9349905 9352210 Trre9g01160 9 9349905 9352210 ECH
Trre5g05902 5 58606476 58607829 Trre9g01160 9 9349905 9352210 ECH
Trre7g02733 7 23602050 23603229 Trre9g01160 9 9349905 9352210 ECH