Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01154 ATGGTACAAAAGCTTTCTAATGTTGATATTAAAGGATCTGGGTTTAACTTTGTACCTATTTCTGAAGTTGTTGGAGGTTCTTATGACACTGATTATTTAGTTGATGTTATTGGCATTTTGACTGGTGTTGGAACTGAGCGTGAAGTCACAAACCAAAATGGAAGCACCACTAAGTTGAATGTGATTGCTTTAGAGGCTGAAGGGCATAAGTTGCAGTGTACTTTGTTTGGACCCTATGTTGATGAGTTGAATGCTTTTATTGGTTCTGGTGACTACAACAATGCTATTGTTGTTCTTCAATTTGCCAAGGCTAAGCCATTTCAAGACAAGATACACATACAAAACTGTTTGAACTGTAGCAAGTTGTACTTTAACCCTAACTGCCCAGAAAGTGCAGTCTTGAGGCAAAGCTTGCCTGAAAGTGTAGAAAATCCTTCTCCAATCACTCTTACTCAAATCCAGATGGAGCCTGTTGTTAGCCCAATGGATGAGTTTGTATTCAACACACCAAGAATCACTTTGCAAGAACTTAAAGATTCTACAACTGAATCACTTCATGTTGTATGTGCTACTGTCAAGAAAATATTGAATCCAGATTGTTTTTGGTATACTGCCTGTGTTTGTAACAAATCTGTGATACCTGATTCAAACATGTTTTTTTGTGAAAAATGCAACAAGCATGTGGTTAAGGTTTACCCAAGGTATTGTATGAAGGTCAGAGTTATGGACCACACAGATTCTGCCAGTTTTGTGATATTTGACAGAGATGCAGCTTCATTGTTCAACATGAGTTGTGCAGAGATGTTAAATGAAACTCAAAGGAACGGCACTGTTGGAGTTATTCCACCTCAAATTTCAAAGCTTCTTGACATGAATTTGTTGTTCAAGGTTGAGACAAAACCTTCAACAAATCCTAGGTTTGAGCAAACTTTTAGGGTTAGAAAAATTTGCACTGATTCTGCCATCATTAAGACATTCAAGGACAAGTGGGATAATGAAGAGGCATCTATTAGCAAAATAAACAATGAGGTTGGTTCTTTGAGTACTTTGCTGGAAAAAGGAAAACATCTTTTAGCGTGTAGTACAAACAACATCCTATCTCAGGATTCAGCTTCGTTGACTGCGAGTAGTGGCAGCGGAAAGGGAAAGGAAGCAGCAAATCTCAGCAGTCCTGCTCCAATAACTCAAGATTTAATGAAGAAATTTACGTCAACTGTTATCAACCTTGATGATGATTCTGTTTCTGCATTAGATCTAATTAAGACTCAACAAAGTCAGACTTCTGTTCTATCTTGCAAGGATTTAGAGTCATTGAGTGGAAGCAGTATGGAATCTCAACCAAAAGATGTTGAAGTGAATGGAACTCCTGTTATATATTTACTTCAAACCAAGCCTACTGCTGCTGAGGGTAAAGAGATTGAAAAAACTGTTGTAGCTGATGATGAGGTTGTATCAAGTGCAGAAAATGATAATACTGTGGAGAAGGAGTTTGGTGAATTAAGTGGAGCCAAAGTATATGCAAAGGTTTTAGAGGGTACTCCTGTTGAACTTCACCAACCAGTGGAGGCACATGAAGACTTGGCTGTTGTAAACCTTGAGGGTGATTCGCCTCAACATGATAAGTTGTTTAAGACTCCCAAGGCATTAGGATCAAAGGGAGTTAAGGGCAGGAAGTTTGTGAAGAGAGTTTCACCTGATAAAGTTGCAGAGGAAGATAATGCACCAATTAAGCTATTGAAAAGGGTTATTAAACAAGAGAAAATGTGA 1767 0.382 MVQKLSNVDIKGSGFNFVPISEVVGGSYDTDYLVDVIGILTGVGTEREVTNQNGSTTKLNVIALEAEGHKLQCTLFGPYVDELNAFIGSGDYNNAIVVLQFAKAKPFQDKIHIQNCLNCSKLYFNPNCPESAVLRQSLPESVENPSPITLTQIQMEPVVSPMDEFVFNTPRITLQELKDSTTESLHVVCATVKKILNPDCFWYTACVCNKSVIPDSNMFFCEKCNKHVVKVYPRYCMKVRVMDHTDSASFVIFDRDAASLFNMSCAEMLNETQRNGTVGVIPPQISKLLDMNLLFKVETKPSTNPRFEQTFRVRKICTDSAIIKTFKDKWDNEEASISKINNEVGSLSTLLEKGKHLLACSTNNILSQDSASLTASSGSGKGKEAANLSSPAPITQDLMKKFTSTVINLDDDSVSALDLIKTQQSQTSVLSCKDLESLSGSSMESQPKDVEVNGTPVIYLLQTKPTAAEGKEIEKTVVADDEVVSSAENDNTVEKEFGELSGAKVYAKVLEGTPVELHQPVEAHEDLAVVNLEGDSPQHDKLFKTPKALGSKGVKGRKFVKRVSPDKVAEEDNAPIKLLKRVIKQEKM 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01154 588 Gene3D - 166 324 IPR012340 -
Trre9g01154 588 Pfam Replication factor-A C terminal domain 189 299 IPR013955 -
Trre9g01154 588 SUPERFAMILY Nucleic acid-binding proteins 169 315 IPR012340 -
Trre9g01154 588 CDD RPA1_DBD_C 188 300 IPR047192 -
Trre9g01154 588 CDD RPA1_DBD_B_like 35 139 - -
Trre9g01154 588 Gene3D - 8 145 IPR012340 -
Trre9g01154 588 SUPERFAMILY Nucleic acid-binding proteins 15 142 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01154 Trre-Chr9 9326612 9329261 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01154 15 265 Core DNA Replication Machinery Family AT2G06510 25.379 1.50e-15 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01154 - - tpra:123915045 682.174