Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01149 ATGGAAAATCCGAAGCCGGAAAAACCGGCGACTGAGGCGGAGACGAAGGAAGTTGAATTAATTGTTTCCGATGTCAAGATGACGGAGAGAGACGGTGGTTATTGTCCGCCTCAAGTAGTTCTCGCTGTTGCCGCCGTGGATAGTGACGTTTTGAAGAAGAAGCGTGGTCGTCCGACGAAAGGACTTCCGAAATCAGCTCCTCCGCCGAAGCAGAAAAAGGAAGATGAAGATGTTTGTTTTATATGCTTTGACGGTGGAAGTCTCGTTCTCTGCGATCGCCGGGGCTGCCCTAAAGCATATCATCCGGCATGTGTCAAGCGAGACGAAGCGTTCTTCCGTTCAAAGGCCAAATGGAATTGCGGTTGGCATATATGTAGCTCTTGTCAGAAAGCATCCCATTATATGTGCTATACTTGTACGTATTCTTTGTGCAAGGGGTGTATACAAAATGCTGATTTTGTTTGTGTCAGAGGAAATAAAGGTTTGTGTGGAATATGCAAGAAAACTATAATGCTGATTGAGAACAGTGCCCAGGGAAATAAGGAAATGTGTGAAGTGGATTTTGATGACAAGAGCAGCTGGGAGTATCTTTTCAAGGTGTATTGGATATATTTGAAAGAGAATCTATCTTTAACATTCGATGAGCTCCTTCAAGCTAAAAACCCATTGAGAGGTGCTGCTCCTATGGTACAAACTTCCCATGAACTTCATCATCGTAAAGATGACAAAGGTTCTGGTTCTGAGAACTCCTGTATAGACATAGAATCAAATAATTTGAAAAACAAGAAGTCTAAAGGACCTTTAGGTGGTGACACAGGCGTGTCTTTGCCTGATTGCACGAGATGGGCATCAAAGGAGCTTCTAGAGTTTGTCTCATATATGAAAAATGGTGATACATCTCTCCTGACTCAATTTGATGTCCAGAATCTCTTGCTGGAGTATGTTAAGAAAAACAATTTGCGGGATCCTCAACAGAAATCTCAGATTGTTTGTGACTCTAGACTAGTAAATTTGTTTGGAAAAGCACGTCTTGGCTACATTGAAATGCTAGTGCTCCTTGAGCCCCACTTTCTTATAAAAGACAATACCGGTGCAGAAAAAACTGCTGGAGGAATTAGTGATGCTGTTGCTAATGGAAAGGAGGCCATTGACAATGACAATAAACAGTCGATATTAGTTAATGATAAGAGATGTACAACAAGTAAGAAGGCTGAAGTGCCTGTGCCACTAAATAATAATGATGCATATGCTACAATAAATGCTCACAACATTAACTTGATCTACTTGCGGCGAAGTCTGATGGAGAGTCTGACCGATGATATTGAAAGGATTCATGAGAAGGTTGTTGGTTCTTTTGTGCGGATAAGAATCTCTAGTGGTGACCAGAAACAAGATATGTATAGACTTGTCCAAGTTGTAGGTACAAGCAAGGTTGCCGAACCCTACAAAATTGGCACAAGAACAACTGATATTAAGCTTGAAATTTTAAACTTAAACCGGAAGGAGGTCATACCGATAGATGAGATTTCAAATCAGGAGTTCTCAGAGGATGAATGCAAGCGATTGCGTCAGAGTATAAAGTATGGGCTTTCAAAGAGATTGACTGTGGGAGAGATACTGAACAAAGCATTGACATTTCAAGAAATTAGAGTTGATGACTTGTTGGAAGCCGAGAAATTGCGGCTTAATAATCTTCGTGATAGAGCAAGCGAGAAGGGGCACAGAAAAGAATATCCTTTTACCATTTACTTCTTTTCTCAATATGCTAAACTGTGGCTACTAAATTCACCGGAGGAACGTCAGCGCAGGCTGCATGAAATTCCAGATGTACACTCTGACCCTAATTTGGATTCGTTGTATGAGTCTGATGAAGATGCTGGAGAATCAGATGACAATAAACAAGATGGCAATATGCCTATTTTCTCCAAAATTTGGGATGATGTCTTGAATGGTGTTGGGGGAAGAACAAGAGACTTGACCGCTGCAAGTGAACCAATCAGGAATACATGCTTAGCAAAACAAGATACCAACCCAAACGAAACTGCTACTGATGACAATGCTAATGTTGTAATGAAATCAGAAGTGTCTAGTGTTGCAGTGGATATTTCATCTCCAGTTCTCTCTACTGGGATTGAGCAGTCATTTGACGATTTTATGAATGATAAATCATGGCATTATCAGGATCCTTCCGGGAAGGTTCAAGGACCTTTTTCTATGTTGCAGCTGTATAAGTGGAATGCTAGTGGGCATTTCCCTCCAGATCTCAGAATATGGAGGATAGGTGACAAACCAGTAAACTCTATATTGTTAACTGATGCACTTGATGGAAAGTGCTCCAAAAATGTGTCATCGCAGAACAACAACCTATTGCTCTCTTTAGGAGCCAGTGTTGCATTGGGCGACAAAGAAAGCAGTCAGGATGGCGGGAGGAATTCAATGACGAATGAAATTTCTGCAGATAGCCGAATCATCGAGCAGATAAGAGAACAAAAAGTGGATGATACTTCTACCCAGTCTAATGGTAAAGATGAATCCGTTAAGAGCAATGGATGGCATGACCAGTCACATGTACACCCTTCGCTACAACCAACTGCCTTTTTTGAAAAATTGAATGAGAATCATACAAGCAAATTAATGGAGGATCGTGTGATTGAGAAAAACTCTGAAGATATTGGAAATCATGGCTCAGACAAGACTTCTGGTGGTCAGGGTAATAGTAGTCAGAATCATCAGAAGCAATCCGATAGTGAAGACAACTCAGGGCAATCTTCAGGACAAAACTGGAGACACCCAAATGTAAATATTTCTTCCAATTGCTTGGATACCACTTCGACTCATGTTTCTGGGACAATAACATCACCTCTTAAGTTGGGATTTGATTTGCACCAACCCCCTTCTCCTCCAGCATGTAATGCAACTACATGGCAGGCTATTATTGGTGAACCAGATGATTTTGATGAATCAGTTTCAGATCTTTTGGCAGAGGTGGAAGCAATGGAGTCACTTGGTGGCTTGGAATCTCCCACTTCAATCATGAAACGTAGCGAGGAATTGACTGATGGTTCTAAAAATCTCTGTCTCAGTTTTCCAGAACTTAGCCCAATGCTTGATGCAGGTAAAGGCGATGCATTGAGCTCCACGGGTGATTTACAGTTATTATCTCAATCCACAGCAGTAGAGGAACCATTACAGCAAGCAGATGTCCAACATCATCAAAGAATATCAGTGGAGCTTTCCTCAAGAAATTCTAAAGTTGATGTGGGTTCAAAGGACATATGTGTTTCAAGTAATCAATGGGAGTCGGGCTCGGAAAATTCTCATATTTTTCCATCCACTGCAACATTGAGCATGACTGTAGACACCACTTGGAGACTTGGATTGGACAGTACACACCTGGAATGGGGAGGAATGGATCAACGAAATGCAAACGCGAATTGGGCAGTAGGACAGACGGCAGTAAATGAGAATAGAAGCTCAAATTCACGCACTTCTGTAGTAACTCCAAGCTATGGGGATAACCAAACAAGATATGGAAATGATCGGTTTTCTGTGCCCAGAGATCGGGGTTTTCCTGGTCATGGTAGGGAACCAGGTTTAGTTAGAGGTAGAGCTCCGTGGAACAGGCAACCAGTATTTGGTGTTGGTAATGGAGGCTCATATAGACCTCCGCCGAGAGGGCAGCGAGTTTGTAAATTTTATGAAAGTGGGTACTGTAAGAAAGGGGCATCCTGTGATTACTTCCACCCATGA 3750 0.4195 MENPKPEKPATEAETKEVELIVSDVKMTERDGGYCPPQVVLAVAAVDSDVLKKKRGRPTKGLPKSAPPPKQKKEDEDVCFICFDGGSLVLCDRRGCPKAYHPACVKRDEAFFRSKAKWNCGWHICSSCQKASHYMCYTCTYSLCKGCIQNADFVCVRGNKGLCGICKKTIMLIENSAQGNKEMCEVDFDDKSSWEYLFKVYWIYLKENLSLTFDELLQAKNPLRGAAPMVQTSHELHHRKDDKGSGSENSCIDIESNNLKNKKSKGPLGGDTGVSLPDCTRWASKELLEFVSYMKNGDTSLLTQFDVQNLLLEYVKKNNLRDPQQKSQIVCDSRLVNLFGKARLGYIEMLVLLEPHFLIKDNTGAEKTAGGISDAVANGKEAIDNDNKQSILVNDKRCTTSKKAEVPVPLNNNDAYATINAHNINLIYLRRSLMESLTDDIERIHEKVVGSFVRIRISSGDQKQDMYRLVQVVGTSKVAEPYKIGTRTTDIKLEILNLNRKEVIPIDEISNQEFSEDECKRLRQSIKYGLSKRLTVGEILNKALTFQEIRVDDLLEAEKLRLNNLRDRASEKGHRKEYPFTIYFFSQYAKLWLLNSPEERQRRLHEIPDVHSDPNLDSLYESDEDAGESDDNKQDGNMPIFSKIWDDVLNGVGGRTRDLTAASEPIRNTCLAKQDTNPNETATDDNANVVMKSEVSSVAVDISSPVLSTGIEQSFDDFMNDKSWHYQDPSGKVQGPFSMLQLYKWNASGHFPPDLRIWRIGDKPVNSILLTDALDGKCSKNVSSQNNNLLLSLGASVALGDKESSQDGGRNSMTNEISADSRIIEQIREQKVDDTSTQSNGKDESVKSNGWHDQSHVHPSLQPTAFFEKLNENHTSKLMEDRVIEKNSEDIGNHGSDKTSGGQGNSSQNHQKQSDSEDNSGQSSGQNWRHPNVNISSNCLDTTSTHVSGTITSPLKLGFDLHQPPSPPACNATTWQAIIGEPDDFDESVSDLLAEVEAMESLGGLESPTSIMKRSEELTDGSKNLCLSFPELSPMLDAGKGDALSSTGDLQLLSQSTAVEEPLQQADVQHHQRISVELSSRNSKVDVGSKDICVSSNQWESGSENSHIFPSTATLSMTVDTTWRLGLDSTHLEWGGMDQRNANANWAVGQTAVNENRSSNSRTSVVTPSYGDNQTRYGNDRFSVPRDRGFPGHGREPGLVRGRAPWNRQPVFGVGNGGSYRPPPRGQRVCKFYESGYCKKGASCDYFHP 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01149 1249 SUPERFAMILY SWIB/MDM2 domain 281 358 IPR036885 -
Trre9g01149 1249 SMART swib_2 280 362 IPR019835 -
Trre9g01149 1249 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 969 1249 - -
Trre9g01149 1249 ProSiteProfiles GYF domain profile. 721 775 IPR003169 GO:0005515
Trre9g01149 1249 CDD PHD5_NSD 78 123 - -
Trre9g01149 1249 SMART PHD_3 78 124 IPR001965 -
Trre9g01149 1249 SUPERFAMILY GYF domain 720 774 IPR035445 -
Trre9g01149 1249 SMART rtf1 418 528 IPR004343 GO:0003677
Trre9g01149 1249 SUPERFAMILY CCCH zinc finger 1224 1248 IPR036855 GO:0046872
Trre9g01149 1249 Gene3D - 723 779 IPR035445 -
Trre9g01149 1249 Gene3D - 419 548 IPR036128 GO:0003677
Trre9g01149 1249 Gene3D SWIB/MDM2 domain 276 366 IPR036885 -
Trre9g01149 1249 FunFam Zinc finger CCCH domain-containing protein 19 419 548 - -
Trre9g01149 1249 ProSiteProfiles Zinc finger C3H1-type profile. 1224 1249 IPR000571 GO:0046872
Trre9g01149 1249 CDD SWIB-MDM2_like 281 357 - -
Trre9g01149 1249 ProSiteProfiles SWIB/MDM2 domain profile. 276 359 IPR003121 -
Trre9g01149 1249 SUPERFAMILY FYVE/PHD zinc finger 52 123 IPR011011 -
Trre9g01149 1249 MobiDBLite consensus disorder prediction 822 851 - -
Trre9g01149 1249 MobiDBLite consensus disorder prediction 805 821 - -
Trre9g01149 1249 SUPERFAMILY Plus3-like 420 548 IPR036128 GO:0003677
Trre9g01149 1249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 167 IPR013083 -
Trre9g01149 1249 MobiDBLite consensus disorder prediction 801 859 - -
Trre9g01149 1249 Pfam GYF domain 724 767 IPR003169 GO:0005515
Trre9g01149 1249 Pfam SWIB/MDM2 domain 284 357 IPR003121 -
Trre9g01149 1249 SMART gyf_5 722 777 IPR003169 GO:0005515
Trre9g01149 1249 FunFam Zinc finger CCCH domain-containing protein 19 69 168 - -
Trre9g01149 1249 ProSitePatterns Zinc finger PHD-type signature. 79 139 IPR019786 -
Trre9g01149 1249 MobiDBLite consensus disorder prediction 606 637 - -
Trre9g01149 1249 ProSiteProfiles Plus3 domain profile. 418 551 IPR004343 GO:0003677
Trre9g01149 1249 MobiDBLite consensus disorder prediction 894 941 - -
Trre9g01149 1249 MobiDBLite consensus disorder prediction 1155 1180 - -
Trre9g01149 1249 Pfam Plus-3 domain 423 526 IPR004343 GO:0003677
Trre9g01149 1249 MobiDBLite consensus disorder prediction 889 941 - -
Trre9g01149 1249 ProSiteProfiles Zinc finger PHD-type profile. 76 142 IPR019787 -
Trre9g01149 1249 CDD GYF 721 774 IPR003169 GO:0005515
Trre9g01149 1249 MobiDBLite consensus disorder prediction 1155 1204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01149 Trre-Chr9 9304097 9310096 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01149 75 156 PHD Transcription Factor Family AT5G36670 33.333 1.95e-06 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Trre9g01149 Plus-3 2.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01149 - - aprc:113869503 1852.8