Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01148 ATGGAAAATCCGAAGCCGGAAAAACCGGCGACTGAGGCGGAGACGAAGGAAGTTGAATTAATTGTTTCCGATGTCAAGATGACGGAGAGAGACGGTGGTTATTGTCCGCCTCAAGTAGTTCTCGCTGTTGCCGCCGTGGATAGTGACGTTTTGAAGAAGAAGCGTGGTCGTCCGACGAAAGGACTTCCGAAATCAGCTCCTCCGCCGAAGCAGAAAAAGGAAGATGAAGATGTTTGTTTTATATGCTTTGACGGTGGAAGTCTCGTTCTCTGCGATCGCCGGGGCTGCCCTAAAGCATATCATCCGGCATGTGTCAAGCGAGACGAAGCGTTCTTCCGTTCAAAGGCCAAATGGAATTGCGGTTGGCATATATGTAGCTCTTGTCAGAAAGCATCCCATTATATGTGCTATACTTGTACGTATTCTTTGTGCAAGGGGTGTATACAAAATGCTGATTTTGTTTGTGTCAGAGGAAATAAAGGTTTGTGTGGAATATGCAAGAAAACTATAATGCTGATTGAGAACAGTGCCCAGGGAAATAAGGAAATGTGTGAAGTGGATTTTGATGACAAGAGCAGCTGGGAGTATCTTTTCAAGGTGTATTGGATATATTTGAAAGAGAATCTATCTTTAACATTCGATGAGCTCCTTCAAGCTAAAAACCCATTGAGAGGTGCTGCTCCTATGGTACAAACTTCCCATGAACTTCATCATCGTAAAGATGACAAAGGTTCTGGTTCTGAGAACTCCTGTATAGACATAGAATCAAATAATTTGAAAAACAAGAAGTCTAAAGGACCTTTAGGTGGTGACACAGGCGTGTCTTTGCCTGATTGCACGAGATGGGCATCAAAGGAGCTTCTAGAGTTTGTCTCATATATGAAAAATGGTGATACATCTCTCCTGACTCAATTTGATGTCCAGAATCTCTTGCTGGAGTATGTTAAGAAAAACAATTTGCGGGATCCTCAACAGAAATCTCAGATTGTTTGTGACTCTAGACTAGTAAATTTGTTTGGAAAAGCACGTCTTGGCTACATTGAAATGCTAGTGCTCCTTGAGCCCCACTTTCTTATAAAAGACAATACCGGTGCAGAAAAAACTGCTGGAGGAATTAGTGATGCTGTTGCTAATGGAAAGGAGGCCATTGACAATGACAATAAACAGTCGATATTAGTTAATGATAAGAGATGTACAACAAGTAAGAAGGCTGAAGTGCCTGTGCCACTAAATAATAATGATGCATATGCTACAATAAATGCTCACAACATTAACTTGATCTACTTGCGGCGAAGTCTGATGGAGAGTCTGACCGATGATATTGAAAGGATTCATGAGAAGGTTGTTGGTTCTTTTGTGCGGATAAGAATCTCTAGTGGTGACCAGAAACAAGATATGTATAGACTTGTCCAAGTTGTAGGTACAAGCAAGGTTGCCGAACCCTACAAAATTGGCACAAGAACAACTGATATTAAGCTTGAAATTTTAAACTTAAACCGGAAGGAGGTCATACCGATAGATGAGATTTCAAATCAGGAGTTCTCAGAGGATGAATGCAAGCGATTGCGTCAGAGTATAAAGTATGGGCTTTCAAAGAGATTGACTGTGGGAGAGATACTGAACAAAGCATTGACATTTCAAGAAATTAGAGTTGATGACTTGTTGGAAGCCGAGAAATTGCGGCTTAATAATCTTCGTGATAGAGCAAGCGAGAAGGGGCACAGAAAAGAGCTTAAAGAATGCGTGGAGAAGTTGCAGCTACTAAATTCACCGGAGGAACGTCAGCGCAGGCTGCATGAAATTCCAGATGTACACTCTGACCCTAATTTGGATTCGTTGTATGAGTCTGATGAAGATGCTGGAGAATCAGATGACAATAAACAAGATGGCAATATGCCTATTTTCTCCAAAATTTGGGATGATGTCTTGAATGGTGTTGGGGGAAGAACAAGAGACTTGACCGCTGCAAGTGAACCAATCAGGAATACATGCTTAGCAAAACAAGATACCAACCCAAACGAAACTGCTACTGATGACAATGCTAATGTTGTAATGAAATCAGAAGTGTCTAGTGTTGCAGTGGATATTTCATCTCCAGTTCTCTCTACTGGGATTGAGCAGTCATTTGACGATTTTATGAATGATAAATCATGGCATTATCAGGATCCTTCCGGGAAGGTTCAAGGACCTTTTTCTATGTTGCAGCTGTATAAGTGGAATGCTAGTGGGCATTTCCCTCCAGATCTCAGAATATGGAGGATAGGTGACAAACCAGTAAACTCTATATTGTTAACTGATGCACTTGATGGAAAGTGCTCCAAAAATGTGTCATCGCAGAACAACAACCTATTGCTCTCTTTAGGAGCCAGTGTTGCATTGGGCGACAAAGAAAGCAGTCAGGATGGCGGGAGGAATTCAATGACGAATGAAATTTCTGCAGATAGCCGAATCATCGAGCAGATAAGAGAACAAAAAGTGGATGATACTTCTACCCAGTCTAATGGTAAAGATGAATCCGTTAAGAGCAATGGATGGCATGACCAGTCACATGTACACCCTTCGCTACAACCAACTGCCTTTTTTGAAAAATTGAATGAGAATCATACAAGCAAATTAATGGAGGATCGTGTGATTGAGAAAAACTCTGAAGATATTGGAAATCATGGCTCAGACAAGACTTCTGGTGGTCAGGGTAATAGTAGTCAGAATCATCAGAAGCAATCCGATAGTGAAGACAACTCAGGGCAATCTTCAGGACAAAACTGGAGACACCCAAATGTAAATATTTCTTCCAATTGCTTGGATACCACTTCGACTCATGTTTCTGGGACAATAACATCACCTCTTAAGTTGGGATTTGATTTGCACCAACCCCCTTCTCCTCCAGCATGTAATGCAACTACATGGCAGGCTATTATTGGTGAACCAGATGATTTTGATGAATCAGTTTCAGATCTTTTGGCAGAGGTGGAAGCAATGGAGTCACTTGGTGGCTTGGAATCTCCCACTTCAATCATGAAACGTAGCGAGGAATTGACTGATGGTTCTAAAAATCTCTGTCTCAGTTTTCCAGAACTTAGCCCAATGCTTGATGCAGGTAAAGGCGATGCATTGAGCTCCACGGGTGATTTACAGTTATTATCTCAATCCACAGCAGTAGAGGAACCATTACAGCAAGCAGATGTCCAACATCATCAAAGAATATCAGTGGAGCTTTCCTCAAGAAATTCTAAAGTTGATGTGGGTTCAAAGGACATATGTGTTTCAAGTAATCAATGGGAGTCGGGCTCGGAAAATTCTCATATTTTTCCATCCACTGCAACATTGAGCATGACTGTAGACACCACTTGGAGACTTGGATTGGACAGTACACACCTGGAATGGGGAGGAATGGATCAACGAAATGCAAACGCGAATTGGGCAGTAGGACAGACGGCAGTAAATGAGAATAGAAGCTCAAATTCACGCACTTCTGTAGTAACTCCAAGCTATGGGGATAACCAAACAAGATATGGAAATGATCGGTTTTCTGTGCCCAGAGATCGGGGTTTTCCTGGTCATGGTAGGGAACCAGGTTTAGTTAGAGGTAGAGCTCCGTGGAACAGGCAACCAGTATTTGGTGTTGGTAATGGAGGCTCATATAGACCTCCGCCGAGAGGGCAGCGAGTTTGTAAATTTTATGAAAGTGGGTACTGTAAGAAAGGGGCATCCTGTGATTACTTCCACCCATGA 3732 0.4212 MENPKPEKPATEAETKEVELIVSDVKMTERDGGYCPPQVVLAVAAVDSDVLKKKRGRPTKGLPKSAPPPKQKKEDEDVCFICFDGGSLVLCDRRGCPKAYHPACVKRDEAFFRSKAKWNCGWHICSSCQKASHYMCYTCTYSLCKGCIQNADFVCVRGNKGLCGICKKTIMLIENSAQGNKEMCEVDFDDKSSWEYLFKVYWIYLKENLSLTFDELLQAKNPLRGAAPMVQTSHELHHRKDDKGSGSENSCIDIESNNLKNKKSKGPLGGDTGVSLPDCTRWASKELLEFVSYMKNGDTSLLTQFDVQNLLLEYVKKNNLRDPQQKSQIVCDSRLVNLFGKARLGYIEMLVLLEPHFLIKDNTGAEKTAGGISDAVANGKEAIDNDNKQSILVNDKRCTTSKKAEVPVPLNNNDAYATINAHNINLIYLRRSLMESLTDDIERIHEKVVGSFVRIRISSGDQKQDMYRLVQVVGTSKVAEPYKIGTRTTDIKLEILNLNRKEVIPIDEISNQEFSEDECKRLRQSIKYGLSKRLTVGEILNKALTFQEIRVDDLLEAEKLRLNNLRDRASEKGHRKELKECVEKLQLLNSPEERQRRLHEIPDVHSDPNLDSLYESDEDAGESDDNKQDGNMPIFSKIWDDVLNGVGGRTRDLTAASEPIRNTCLAKQDTNPNETATDDNANVVMKSEVSSVAVDISSPVLSTGIEQSFDDFMNDKSWHYQDPSGKVQGPFSMLQLYKWNASGHFPPDLRIWRIGDKPVNSILLTDALDGKCSKNVSSQNNNLLLSLGASVALGDKESSQDGGRNSMTNEISADSRIIEQIREQKVDDTSTQSNGKDESVKSNGWHDQSHVHPSLQPTAFFEKLNENHTSKLMEDRVIEKNSEDIGNHGSDKTSGGQGNSSQNHQKQSDSEDNSGQSSGQNWRHPNVNISSNCLDTTSTHVSGTITSPLKLGFDLHQPPSPPACNATTWQAIIGEPDDFDESVSDLLAEVEAMESLGGLESPTSIMKRSEELTDGSKNLCLSFPELSPMLDAGKGDALSSTGDLQLLSQSTAVEEPLQQADVQHHQRISVELSSRNSKVDVGSKDICVSSNQWESGSENSHIFPSTATLSMTVDTTWRLGLDSTHLEWGGMDQRNANANWAVGQTAVNENRSSNSRTSVVTPSYGDNQTRYGNDRFSVPRDRGFPGHGREPGLVRGRAPWNRQPVFGVGNGGSYRPPPRGQRVCKFYESGYCKKGASCDYFHP 1243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01148 1243 Pfam SWIB/MDM2 domain 284 357 IPR003121 -
Trre9g01148 1243 SUPERFAMILY SWIB/MDM2 domain 281 358 IPR036885 -
Trre9g01148 1243 SMART swib_2 280 362 IPR019835 -
Trre9g01148 1243 MobiDBLite consensus disorder prediction 888 935 - -
Trre9g01148 1243 Gene3D - 419 548 IPR036128 GO:0003677
Trre9g01148 1243 Pfam Plus-3 domain 423 526 IPR004343 GO:0003677
Trre9g01148 1243 MobiDBLite consensus disorder prediction 883 935 - -
Trre9g01148 1243 CDD PHD5_NSD 78 123 - -
Trre9g01148 1243 SMART PHD_3 78 124 IPR001965 -
Trre9g01148 1243 Pfam GYF domain 718 761 IPR003169 GO:0005515
Trre9g01148 1243 SMART rtf1 418 528 IPR004343 GO:0003677
Trre9g01148 1243 CDD GYF 715 768 IPR003169 GO:0005515
Trre9g01148 1243 Gene3D SWIB/MDM2 domain 276 366 IPR036885 -
Trre9g01148 1243 MobiDBLite consensus disorder prediction 593 631 - -
Trre9g01148 1243 Gene3D - 717 773 IPR035445 -
Trre9g01148 1243 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 963 1243 - -
Trre9g01148 1243 FunFam Zinc finger CCCH domain-containing protein 19 419 548 - -
Trre9g01148 1243 CDD SWIB-MDM2_like 281 357 - -
Trre9g01148 1243 ProSiteProfiles SWIB/MDM2 domain profile. 276 359 IPR003121 -
Trre9g01148 1243 MobiDBLite consensus disorder prediction 593 612 - -
Trre9g01148 1243 SUPERFAMILY FYVE/PHD zinc finger 52 123 IPR011011 -
Trre9g01148 1243 SUPERFAMILY Plus3-like 420 548 IPR036128 GO:0003677
Trre9g01148 1243 MobiDBLite consensus disorder prediction 1149 1174 - -
Trre9g01148 1243 SUPERFAMILY GYF domain 714 768 IPR035445 -
Trre9g01148 1243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 167 IPR013083 -
Trre9g01148 1243 FunFam Zinc finger CCCH domain-containing protein 19 69 168 - -
Trre9g01148 1243 ProSitePatterns Zinc finger PHD-type signature. 79 139 IPR019786 -
Trre9g01148 1243 SUPERFAMILY CCCH zinc finger 1218 1242 IPR036855 GO:0046872
Trre9g01148 1243 MobiDBLite consensus disorder prediction 1149 1198 - -
Trre9g01148 1243 MobiDBLite consensus disorder prediction 795 853 - -
Trre9g01148 1243 MobiDBLite consensus disorder prediction 816 845 - -
Trre9g01148 1243 ProSiteProfiles Plus3 domain profile. 418 551 IPR004343 GO:0003677
Trre9g01148 1243 MobiDBLite consensus disorder prediction 799 815 - -
Trre9g01148 1243 ProSiteProfiles Zinc finger C3H1-type profile. 1218 1243 IPR000571 GO:0046872
Trre9g01148 1243 ProSiteProfiles GYF domain profile. 715 769 IPR003169 GO:0005515
Trre9g01148 1243 SMART gyf_5 716 771 IPR003169 GO:0005515
Trre9g01148 1243 ProSiteProfiles Zinc finger PHD-type profile. 76 142 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01148 Trre-Chr9 9304097 9310096 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01148 75 156 PHD Transcription Factor Family AT5G36670 33.333 2.01e-06 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Trre9g01148 Plus-3 2.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01148 - - aprc:113869503 1871.67