Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01146 ATGATGGAAGAGCTACAGCAGCAACAGATTCAGCAACCGGTGGTGATACCGGTGACCGGAGAAGTTAGGGTTTCTGAGAATTCTCAGATGATGATCGGAGTCAACGCTTCCGATGTTGACTTAAGGATGACCGACGGTGGTAGTTGTGACACTGTTTTGAAAAGGAAACGTGGTCGTCCTCCGAAAGGAACTCTTCCTCCTCATCCACGGTTGAAAAAGCCGAAAGATGAAGAAGATGTTTGTTTTATTTGTTTCGATGGTGGTTCACTTGTTCTCTGTGATTATCGGGGTTGTCCTAAGGCGTATCATCCTGCGTGTGTGAAGCGTGATGAAGAGTTTTTCCGTTTAACCGAGAAATGGAATTGTGGTTGGCATCTATGTAGCGATTGTGGCAAATCATGCCACTACATGTGCTATACTTGTACATATTCCCTGTGCAAGGGATGTACCAAAAAAGAATCCGATTTTGTTAGTGTCAGAGGAAACAAAGGTTTGTGTGGAGCATGCAAGAGGACAATAATGCTGATCGAAAACAGTGCCCTGGGAATTAAGTGTGAAGTGGATTTTGATGACAAAAGCAGCTGGGAGTATCTTTTCAAGGTGTATTGGATGTACTTGAAAGAAAAACTATCTCTTGATTTTGATGAGATCCATCGAGCTAAAAATCCATGGAAAAGTGCTGTTCGTGCGAGTTGCAAGGTTCAAACTCCCCGAAAACTTCATCATCTTAAAGTTGACAATGGTTATGGATCCGAGAATTCCTGTGTAGTTGATTCAAATAGTCCAATAAACAAGAAGGTTAAGGAAAATATTTGGGATAGTTTCTTGGACGGTACTGGACACAATGCACAAGACTTGTCGACTACCTGTGAGCTAAATGGAAATACATGTGTAATAAAGAACCAAATCAATCCTAATGACTCAGCAATTGATGATGCCACTAATCCAAGAGTTGCGAGACTAAGAGAACCAGTCTGGCATTATCAGGATACAAATGGGGAGGTTCATGGTCCTGTTAGTATGTTGTTTCTGTGCAAGTTGAAAGGAACTGAACGTCTCCCTCTAGATCTCAGAATATGGAGGATAGATGAGAAACAAGAGAACTCTAGATTATTTTCTGATGCACTGAGTTTGAAGTGTTTCCAAAAAGCATCATTGCCACTGAACTGTGAACAACAGTCTTTGGGGGCCAGTGTTGCATTAGAAACCACCATAGAAAATAGTCAGGGTGGTCTTAGCAATGAAACAAGGAGTGAAATTTGTGCTAACAACCAAACTGTCAAGCAGGGCGAGGCGGAAAAGGTGGGTGATACTTATACCCCACCTAATGGTACAGATGAATCTGTTAAGAGCAATGGAGGGCACACTCCGTCTCCTGGTTTGACTACACAAGCAGATGGGAATATAAGTGACGGGCAAAGTGGTCATTTTGAACGAAGGGAAGAGTCACCCAAATGTGACATTTCTTGTCATGATGGTCCCGACGTACACCCTGCACTACCTTCAAATGCCTTTCATGAGAAATTGAATGACAAACCTGATAAAGTGGTGGAAGGTCATGGGAATGAGCAAAAATTTGAAGTGAATGGAAATTTGGGTTCCCATAGGTCTTCCGAGGGTCCGAGTAATAGTGGGCAAAGTGATCAAAAGCAATCTGACAATGAAGAGAATTCAGGCCAATCTTCTGGTCAGAATTGGAGAGGCCCTAGTGTAGTTCATCATCCACCAATGGACGCTTCTTCATGGATAGCATCAATCTTTGGCGATACTGATACATTAGTTGATGATTCAGTTTCAGATCTGTTGGAACAAGTAGCAGCAAAGGAGAAGGATGGTGTATTGGAAACTCCCACAGCAATAGAGTGGGATGATGAGTTGACTGAGGGTGCTATAACTGATTGTTTCAGTTTTGCTGCTAATGCACTTAGCCCAATGCTTGATGCAGGTAAAGGTGATGCACTGAGCTCCTCAAGTGATTTACATTTACCATCTCAATCCACTGCAGCAGAGGAGCCATTTCTGCAAGTAAACATGCATAATCATCAAACTATATGTGGGGAACAATCCTCAAAAGCTCCTGAAGTTGAGTCTACTTTTTCGGGTATTAGCTGGAATCCAACTCATCAATTTTCATGGGATCCGACTCGTTGA 2151 0.4254 MMEELQQQQIQQPVVIPVTGEVRVSENSQMMIGVNASDVDLRMTDGGSCDTVLKRKRGRPPKGTLPPHPRLKKPKDEEDVCFICFDGGSLVLCDYRGCPKAYHPACVKRDEEFFRLTEKWNCGWHLCSDCGKSCHYMCYTCTYSLCKGCTKKESDFVSVRGNKGLCGACKRTIMLIENSALGIKCEVDFDDKSSWEYLFKVYWMYLKEKLSLDFDEIHRAKNPWKSAVRASCKVQTPRKLHHLKVDNGYGSENSCVVDSNSPINKKVKENIWDSFLDGTGHNAQDLSTTCELNGNTCVIKNQINPNDSAIDDATNPRVARLREPVWHYQDTNGEVHGPVSMLFLCKLKGTERLPLDLRIWRIDEKQENSRLFSDALSLKCFQKASLPLNCEQQSLGASVALETTIENSQGGLSNETRSEICANNQTVKQGEAEKVGDTYTPPNGTDESVKSNGGHTPSPGLTTQADGNISDGQSGHFERREESPKCDISCHDGPDVHPALPSNAFHEKLNDKPDKVVEGHGNEQKFEVNGNLGSHRSSEGPSNSGQSDQKQSDNEENSGQSSGQNWRGPSVVHHPPMDASSWIASIFGDTDTLVDDSVSDLLEQVAAKEKDGVLETPTAIEWDDELTEGAITDCFSFAANALSPMLDAGKGDALSSSSDLHLPSQSTAAEEPFLQVNMHNHQTICGEQSSKAPEVESTFSGISWNPTHQFSWDPTR 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01146 716 FunFam Zinc finger CCCH domain-containing protein 19 70 171 - -
Trre9g01146 716 ProSitePatterns Zinc finger PHD-type signature. 81 141 IPR019786 -
Trre9g01146 716 Gene3D - 325 381 IPR035445 -
Trre9g01146 716 MobiDBLite consensus disorder prediction 441 471 - -
Trre9g01146 716 MobiDBLite consensus disorder prediction 527 568 - -
Trre9g01146 716 SMART PHD_3 80 126 IPR001965 -
Trre9g01146 716 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 289 571 - -
Trre9g01146 716 MobiDBLite consensus disorder prediction 424 507 - -
Trre9g01146 716 MobiDBLite consensus disorder prediction 525 575 - -
Trre9g01146 716 MobiDBLite consensus disorder prediction 473 492 - -
Trre9g01146 716 SUPERFAMILY FYVE/PHD zinc finger 58 125 IPR011011 -
Trre9g01146 716 SUPERFAMILY GYF domain 321 377 IPR035445 -
Trre9g01146 716 CDD PHD5_NSD 80 125 - -
Trre9g01146 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 172 IPR013083 -
Trre9g01146 716 MobiDBLite consensus disorder prediction 54 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01146 Trre-Chr9 9282925 9286653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01146 78 152 PHD Transcription Factor Family AT4G14920 38.667 2.89e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01146 - - tpra:123904147 1342.79