Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01145 ATGGCAAAGAAACAATGTAGATTTCACTCTTCATGGTCTGAACTTCCTGAATCATTTGATTGGAGAGATTACAGTGGTGTGTTGTCAAGGACCAGCGACCAAGGCCGTTGTGCTTCTTGTTGGGCGTTCTCGGTCACACATGCTATACAATCCGCCCTAAAGCTTAATAGGGGTGTGTCCGTGTTGCTCTCAAAGCAGGAATTATTAGACTGTGTATATCACGAGAAAGATGAAGGTGGATGGTTAGATTTATCGTACGCCTACATATATAGATACGGTAGTGCTTTAGAAAAGTATTGTGATGCGTACGATCTTCCATGCGAGACGGTAAGTAGGCGCGTTTATATTGATGGTTTCGCTCGATGTGAGGAAAGTTTGATGAAAGTTGTATTGAATCAACCAATATCCGTAAGCTTATGTGCTGGCATAGAGCTTATGGATGGTTATCAAAAGGGTGATATTTTCGATGCGCCGAGATGTCACATTTTCGATGAGGAGGGTAAATTGAAAGCAATCGATAATGATGATATCAACCATTCTGCATTAGGATATGGTTCAAATGATGGAAATGATTATTGGATTTTACAAAATTCATGGGGTAAAGCATGGGGCGACAAAGGATTTTTTTTTCTAAAGAGAAATAATGGAAGTCGATTTGGACAATGCAATATAGCAATGAATGCATGGTATCCAATAATTCATCGTAGTGGCAAAATAAGATCTGGTGGAAGACCTTACTTTAGAGGACTTGGTGGAGAGATTGAAGAAAACAATGGTGGCGAGAGTTTCAAGCGCGAAATGAGGGATTCGGAAGAGCTGTTGTCAAAGCTGAATCCCATGGCTGAGGAATATGTTCCCTCTTCACTAACAAACAATGAGGGCTACTTAGCTGCTGGACCTACTGCTGGACTTGGTTACCCTAACAATTTGATGCTTCTGAATAATTATGCTAATGCTAACGGCCAAACTAACCAAAGGTGGTGTGTTTTGCAGAGGAAGAATGACTATACTACTAATGGGAAGCAAAGTGTGAATCATAAAGTAGATATGGAGAAAAGAGAAGAGATGAATAGGAGGACTGTTTATGTTTTTGACATAGATCAACTTGTTACTGAAGAGCAGTTGGCATCTCTCTTTCTTAGTTGCGGCCAGGTTGTTGATTGCCGTGTATGCGGAGATCCCAATTCTATTCTCCGATTTGCCTTAATTGAGTTTACTGATGAAGAAAGTGCTAGGGCTGCTGTAAGCCTGTCTGGAACTATGCTGGGATATTATCCACTGAGAGTGCTGCCTTCCAAAACTGCTATTGAACCTGTCAATCCAACATTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTTCTCAAGAACAATTTATTGCACAAACATCGACAAGAAGCTGACTCAAGCAGATGTGAAACACTTATTTGAATCGATCTGTGGAGAGGTCCAACGGCTGAGGCTTCTTGGGGATTACCAGCATTCAACTCGGATTGCATTTGTTGAGTTCACAGTGGCTGAGAGTGCAATTGCAGCTCTAAGTTGCAGTGGCGTGATTTTGGGTGCGCTGCCTATAAGGGTACGTCTGTCAAAGACACCAGTCTGA 1605 0.4187 MAKKQCRFHSSWSELPESFDWRDYSGVLSRTSDQGRCASCWAFSVTHAIQSALKLNRGVSVLLSKQELLDCVYHEKDEGGWLDLSYAYIYRYGSALEKYCDAYDLPCETVSRRVYIDGFARCEESLMKVVLNQPISVSLCAGIELMDGYQKGDIFDAPRCHIFDEEGKLKAIDNDDINHSALGYGSNDGNDYWILQNSWGKAWGDKGFFFLKRNNGSRFGQCNIAMNAWYPIIHRSGKIRSGGRPYFRGLGGEIEENNGGESFKREMRDSEELLSKLNPMAEEYVPSSLTNNEGYLAAGPTAGLGYPNNLMLLNNYANANGQTNQRWCVLQRKNDYTTNGKQSVNHKVDMEKREEMNRRTVYVFDIDQLVTEEQLASLFLSCGQVVDCRVCGDPNSILRFALIEFTDEESARAAVSLSGTMLGYYPLRVLPSKTAIEPVNPTFLPRSEDEREMFSRTIYCTNIDKKLTQADVKHLFESICGEVQRLRLLGDYQHSTRIAFVEFTVAESAIAALSCSGVILGALPIRVRLSKTPV 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01145 534 Pfam Papain family cysteine protease 15 232 IPR000668 GO:0006508|GO:0008234
Trre9g01145 534 SUPERFAMILY RNA-binding domain, RBD 348 436 IPR035979 GO:0003676
Trre9g01145 534 SMART rrm1_1 457 528 IPR000504 GO:0003723
Trre9g01145 534 SMART rrm1_1 360 430 IPR000504 GO:0003723
Trre9g01145 534 Gene3D Cysteine proteinases 2 233 - -
Trre9g01145 534 Gene3D - 441 534 IPR012677 -
Trre9g01145 534 Gene3D - 320 438 IPR012677 -
Trre9g01145 534 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 359 434 IPR000504 GO:0003723
Trre9g01145 534 CDD RRM2_CID8_like 452 533 IPR034825 -
Trre9g01145 534 SUPERFAMILY RNA-binding domain, RBD 447 532 IPR035979 GO:0003676
Trre9g01145 534 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 456 532 IPR000504 GO:0003723
Trre9g01145 534 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 272 533 - -
Trre9g01145 534 SMART pept_c1 15 232 IPR000668 GO:0006508|GO:0008234
Trre9g01145 534 FunFam Polyadenylate-binding protein-interacting protein 10 450 528 - -
Trre9g01145 534 CDD Peptidase_C1A 16 231 IPR039417 -
Trre9g01145 534 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 192 211 IPR025661 -
Trre9g01145 534 CDD RRM1_CID8_like 358 436 IPR034823 -
Trre9g01145 534 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 458 520 IPR000504 GO:0003723
Trre9g01145 534 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 361 424 IPR000504 GO:0003723
Trre9g01145 534 SUPERFAMILY Cysteine proteinases 9 232 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01145 Trre-Chr9 9239371 9244470 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01145 358 520 Eukaryotic Initiation Factors Gene Family AT1G34140 25.749 6.63e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01145 - - gmx:106794116 434.106