Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01128 ATGGAGTGCGTTGAAACAGCTTTGAAAACAAGTTTAAGGAAAGACATGATTCCTCAAACATTTGTTGATGAGCTTACAGGACTTAATGCACAAAATGGAACAACCTCTGACGATTTTTTCGTCGACGACCTTCTTGATTTCTCTCACGTTGAAGAGCAACAACAACTACAAGACGAAGAACAACAACAACAAAAACAAGACTCTGTTTTTGTCTCCCAAAAACAAACCCATGAAATTTCAAACCTCAACAACAGTTTTTCTCTCAAAAGTGATTATGCTTCTCTACCCACCAGTGACCTCAACGTTCCGAGTGATGATGTAGCAGATGATTTAGAATGGCTTTCACATTTTGTTGAAGATTCTGATTCTTTTTCAGAATTTTCTGCTGTTATGCCTGTTGTAACTTTAACAACAACAACAACGGAGAAAAACCCAAAGGGTGTTGTGGTTTCTGAGCCCAAGCCCAAGAATGAAAGCCCGGGCCCGGTTTTTACTACTTTCAAAACTCCGGTTCAGACAAAAGCAAGAAGCAAAAGAACAAGAAACGGTGTTCGGGTTTGGCCATTCGGATCAAATACTTTAACCGAGTCTTCTTCAAGCTCCACAACTTCATCTTCAACTTCTTCGTCTCCAACTAGTCCCTTGTTGATTTACACCAACTTGGTACAAAAATTTGACTCGGTTCCGGTGAAGAAACCGAAGAAAATGACGGGTTTTAATGGGTCGGGTCACGGCACGGTGGTTTCAGCGCCGGCGGCGCCGCGACGGTGCAGTCATTGCGGTGTAACTAAGACTCCTCAGTGGCGAACTGGTCCTCTTGGTGCAAAAACGCTTTGTAATGCTTGTGGGGTCCGTTTTAAATCGGGTCGGTTATTACCCGAATATCGACCCGCTTGTAGTCCTACATTTTCAAGTGAATTGCACTCAAACCACCACCGGAAAGTACTTGAAATGCGGCGGAAGAAGGAGGTTGTTGGTGGTGTTGAAATTGAAACCGGTTTGTCCCCTTCTCCGGTTGTTCCAAGTTTTTGA 1032 0.4351 MECVETALKTSLRKDMIPQTFVDELTGLNAQNGTTSDDFFVDDLLDFSHVEEQQQLQDEEQQQQKQDSVFVSQKQTHEISNLNNSFSLKSDYASLPTSDLNVPSDDVADDLEWLSHFVEDSDSFSEFSAVMPVVTLTTTTTEKNPKGVVVSEPKPKNESPGPVFTTFKTPVQTKARSKRTRNGVRVWPFGSNTLTESSSSSTTSSSTSSSPTSPLLIYTNLVQKFDSVPVKKPKKMTGFNGSGHGTVVSAPAAPRRCSHCGVTKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEVVGGVEIETGLSPSPVVPSF 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01128 343 FunFam GATA transcription factor 248 332 - -
Trre9g01128 343 Gene3D - 249 324 IPR013088 GO:0006355|GO:0008270
Trre9g01128 343 ProSiteProfiles GATA-type zinc finger domain profile. 251 287 IPR000679 GO:0006355|GO:0043565
Trre9g01128 343 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 252 313 - -
Trre9g01128 343 PANTHER GATA TRANSCRIPTION FACTOR 28 323 - -
Trre9g01128 343 SMART GATA_3 251 305 IPR000679 GO:0006355|GO:0043565
Trre9g01128 343 PIRSF Txn_fac_GATA_plant 1 340 IPR016679 GO:0003677|GO:0005634|GO:0045893
Trre9g01128 343 MobiDBLite consensus disorder prediction 145 213 - -
Trre9g01128 343 MobiDBLite consensus disorder prediction 186 213 - -
Trre9g01128 343 CDD ZnF_GATA 256 304 IPR000679 GO:0006355|GO:0043565
Trre9g01128 343 ProSitePatterns GATA-type zinc finger domain. 257 282 IPR000679 GO:0006355|GO:0043565
Trre9g01128 343 Pfam GATA zinc finger 257 291 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01128 Trre-Chr9 9077830 9078979 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01128 5 343 C2C2-Gata Transcription Factor Family AT5G66320 46.154 3.26e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre9g01128 GATA 1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01128 - - psat:127120186 438.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01128 9 9077830 9078979 Trre9g01128 9 9077830 9078979 ECH