Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre9g01128 | ATGGAGTGCGTTGAAACAGCTTTGAAAACAAGTTTAAGGAAAGACATGATTCCTCAAACATTTGTTGATGAGCTTACAGGACTTAATGCACAAAATGGAACAACCTCTGACGATTTTTTCGTCGACGACCTTCTTGATTTCTCTCACGTTGAAGAGCAACAACAACTACAAGACGAAGAACAACAACAACAAAAACAAGACTCTGTTTTTGTCTCCCAAAAACAAACCCATGAAATTTCAAACCTCAACAACAGTTTTTCTCTCAAAAGTGATTATGCTTCTCTACCCACCAGTGACCTCAACGTTCCGAGTGATGATGTAGCAGATGATTTAGAATGGCTTTCACATTTTGTTGAAGATTCTGATTCTTTTTCAGAATTTTCTGCTGTTATGCCTGTTGTAACTTTAACAACAACAACAACGGAGAAAAACCCAAAGGGTGTTGTGGTTTCTGAGCCCAAGCCCAAGAATGAAAGCCCGGGCCCGGTTTTTACTACTTTCAAAACTCCGGTTCAGACAAAAGCAAGAAGCAAAAGAACAAGAAACGGTGTTCGGGTTTGGCCATTCGGATCAAATACTTTAACCGAGTCTTCTTCAAGCTCCACAACTTCATCTTCAACTTCTTCGTCTCCAACTAGTCCCTTGTTGATTTACACCAACTTGGTACAAAAATTTGACTCGGTTCCGGTGAAGAAACCGAAGAAAATGACGGGTTTTAATGGGTCGGGTCACGGCACGGTGGTTTCAGCGCCGGCGGCGCCGCGACGGTGCAGTCATTGCGGTGTAACTAAGACTCCTCAGTGGCGAACTGGTCCTCTTGGTGCAAAAACGCTTTGTAATGCTTGTGGGGTCCGTTTTAAATCGGGTCGGTTATTACCCGAATATCGACCCGCTTGTAGTCCTACATTTTCAAGTGAATTGCACTCAAACCACCACCGGAAAGTACTTGAAATGCGGCGGAAGAAGGAGGTTGTTGGTGGTGTTGAAATTGAAACCGGTTTGTCCCCTTCTCCGGTTGTTCCAAGTTTTTGA | 1032 | 0.4351 | MECVETALKTSLRKDMIPQTFVDELTGLNAQNGTTSDDFFVDDLLDFSHVEEQQQLQDEEQQQQKQDSVFVSQKQTHEISNLNNSFSLKSDYASLPTSDLNVPSDDVADDLEWLSHFVEDSDSFSEFSAVMPVVTLTTTTTEKNPKGVVVSEPKPKNESPGPVFTTFKTPVQTKARSKRTRNGVRVWPFGSNTLTESSSSSTTSSSTSSSPTSPLLIYTNLVQKFDSVPVKKPKKMTGFNGSGHGTVVSAPAAPRRCSHCGVTKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEVVGGVEIETGLSPSPVVPSF | 343 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre9g01128 | 343 | FunFam | GATA transcription factor | 248 | 332 | - | - | |
Trre9g01128 | 343 | Gene3D | - | 249 | 324 | IPR013088 | GO:0006355|GO:0008270 | |
Trre9g01128 | 343 | ProSiteProfiles | GATA-type zinc finger domain profile. | 251 | 287 | IPR000679 | GO:0006355|GO:0043565 | |
Trre9g01128 | 343 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 252 | 313 | - | - | |
Trre9g01128 | 343 | PANTHER | GATA TRANSCRIPTION FACTOR | 28 | 323 | - | - | |
Trre9g01128 | 343 | SMART | GATA_3 | 251 | 305 | IPR000679 | GO:0006355|GO:0043565 | |
Trre9g01128 | 343 | PIRSF | Txn_fac_GATA_plant | 1 | 340 | IPR016679 | GO:0003677|GO:0005634|GO:0045893 | |
Trre9g01128 | 343 | MobiDBLite | consensus disorder prediction | 145 | 213 | - | - | |
Trre9g01128 | 343 | MobiDBLite | consensus disorder prediction | 186 | 213 | - | - | |
Trre9g01128 | 343 | CDD | ZnF_GATA | 256 | 304 | IPR000679 | GO:0006355|GO:0043565 | |
Trre9g01128 | 343 | ProSitePatterns | GATA-type zinc finger domain. | 257 | 282 | IPR000679 | GO:0006355|GO:0043565 | |
Trre9g01128 | 343 | Pfam | GATA zinc finger | 257 | 291 | IPR000679 | GO:0006355|GO:0043565 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre9g01128 | Trre-Chr9 | 9077830 | 9078979 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre9g01128 | 5 | 343 | C2C2-Gata Transcription Factor Family | AT5G66320 | 46.154 | 3.26e-70 | 221 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-GATA | Trre9g01128 | GATA | 1e-16 | CL0167 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre9g01128 | - | - | psat:127120186 | 438.343 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Trre9g01128 | 9 | 9077830 | 9078979 | Trre9g01128 | 9 | 9077830 | 9078979 | ECH |