Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01127 ATGCTTTACCAAACTCCCTATCCTCTTCTCTTTCAATTTCATCCCTTACCTTCATCTTCTTCTTTCACCATTCCTCTCTCAACCATATCACAACCTCAACTTCCTCTCACAAAGGCTTCAAAAACTGAAATGGAGTGCGTTGAAACAGCTTTGAAAACAAGTTTAAGGAAAGACATGATTCCTCAAACATTTGTTGATGAGCTTACAGGACTTAATGCACAAAATGGAACAACCTCTGACGATTTTTTCGTCGACGACCTTCTTGATTTCTCTCACGTTGAAGAGCAACAACAACTACAAGACGAAGAACAACAACAACAAAAACAAGACTCTGTTTTTGTCTCCCAAAAACAAACCCATGAAATTTCAAACCTCAACAACAGTTTTTCTCTCAAAAGTGATTATGCTTCTCTACCCACCAGTGACCTCAACGTTCCGAGTGATGATGTAGCAGATGATTTAGAATGGCTTTCACATTTTGTTGAAGATTCTGATTCTTTTTCAGAATTTTCTGCTGTTATGCCTGTTGTAACTTTAACAACAACAACAACGGAGAAAAACCCAAAGGGTGTTGTGGTTTCTGAGCCCAAGCCCAAGAATGAAAGCCCGGGCCCGGTTTTTACTACTTTCAAAACTCCGGTTCAGACAAAAGCAAGAAGCAAAAGAACAAGAAACGGTGTTCGGGTTTGGCCATTCGGATCAAATACTTTAACCGAGTCTTCTTCAAGCTCCACAACTTCATCTTCAACTTCTTCGTCTCCAACTAGTCCCTTGTTGATTTACACCAACTTGGTACAAAAATTTGACTCGGTTCCGGTGAAGAAACCGAAGAAAATGACGGGTTTTAATGGGTCGGGTCACGGCACGGTGGTTTCAGCGCCGGCGGCGCCGCGACGGTGCAGTCATTGCGGTGTAACTAAGACTCCTCAGTGGCGAACTGGTCCTCTTGGTGCAAAAACGCTTTGTAATGCTTGTGGGGTCCGTTTTAAATCGGGTCGGTTATTACCCGAATATCGACCCGCTTGTAGTCCTACATTTTCAAGTGAATTGCACTCAAACCACCACCGGAAAGTACTTGAAATGCGGCGGAAGAAGGAGGTTGTTGGTGGTGTTGAAATTGAAACCGGTTTGTCCCCTTCTCCGGTTGTTCCAAGTTTTTGA 1161 0.4307 MLYQTPYPLLFQFHPLPSSSSFTIPLSTISQPQLPLTKASKTEMECVETALKTSLRKDMIPQTFVDELTGLNAQNGTTSDDFFVDDLLDFSHVEEQQQLQDEEQQQQKQDSVFVSQKQTHEISNLNNSFSLKSDYASLPTSDLNVPSDDVADDLEWLSHFVEDSDSFSEFSAVMPVVTLTTTTTEKNPKGVVVSEPKPKNESPGPVFTTFKTPVQTKARSKRTRNGVRVWPFGSNTLTESSSSSTTSSSTSSSPTSPLLIYTNLVQKFDSVPVKKPKKMTGFNGSGHGTVVSAPAAPRRCSHCGVTKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEVVGGVEIETGLSPSPVVPSF 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01127 386 MobiDBLite consensus disorder prediction 188 256 - -
Trre9g01127 386 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 295 356 - -
Trre9g01127 386 Pfam GATA zinc finger 300 334 IPR000679 GO:0006355|GO:0043565
Trre9g01127 386 FunFam GATA transcription factor 291 375 - -
Trre9g01127 386 Gene3D - 292 367 IPR013088 GO:0006355|GO:0008270
Trre9g01127 386 CDD ZnF_GATA 299 347 IPR000679 GO:0006355|GO:0043565
Trre9g01127 386 ProSitePatterns GATA-type zinc finger domain. 300 325 IPR000679 GO:0006355|GO:0043565
Trre9g01127 386 PANTHER GATA TRANSCRIPTION FACTOR 71 366 - -
Trre9g01127 386 MobiDBLite consensus disorder prediction 229 256 - -
Trre9g01127 386 SMART GATA_3 294 348 IPR000679 GO:0006355|GO:0043565
Trre9g01127 386 ProSiteProfiles GATA-type zinc finger domain profile. 294 330 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01127 Trre-Chr9 9077567 9078979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01127 48 386 C2C2-Gata Transcription Factor Family AT5G66320 46.154 1.71e-69 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre9g01127 GATA 1.2e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01127 - - psat:127120186 484.952