Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01125 ATGCATGAATACATCACCCCCGGCCTTTCTACAAAGAAGATTATTGATCAGTATCAGAAGACTTTGGGAGATATTGATCTATGGCGTTCACACTATGAGAAAATGCTTGAAAACTTGAAGAAACTGAAAGATATTAACCATAAACTTAGAAGACAAATCAGGCATAGAATAGGTGAAGGTGGTATGGAATTGGAGGATCTGAGCTTCCAGCAACTTCGCAGTCTTGAAGAAGATATGAATTCTTCCATTGCAAAAATACGTGAGAGGAAGTTCCATGTGATCAAAACTAGGACTGATACCTGTAGGAAAAAGGTTAGAAGCTTGGAGCAAATGAATGGAAATCTCCTTCTAGAACTTGAAAAGTGTGTGATCCATCCACAATTTCTTTTCCACGACGAAGGAGACGAGGAATCGGCTGTTGCATTGGCCAATGGTGCTTCTACACTGTATGCATTCTGTCAGCATCATTCTCATATGAATCTTGCTCATCACCATGGAGGAGATGAAGGTTTCAAGAACGACGATCTGCGCCTTGGTTGA 540 0.4074 MHEYITPGLSTKKIIDQYQKTLGDIDLWRSHYEKMLENLKKLKDINHKLRRQIRHRIGEGGMELEDLSFQQLRSLEEDMNSSIAKIRERKFHVIKTRTDTCRKKVRSLEQMNGNLLLELEKCVIHPQFLFHDEGDEESAVALANGASTLYAFCQHHSHMNLAHHHGGDEGFKNDDLRLG 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01125 179 Coils Coil 32 52 - -
Trre9g01125 179 Pfam K-box region 30 119 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre9g01125 179 ProSiteProfiles K-box domain profile. 32 125 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01125 Trre-Chr9 9025409 9027068 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01125 1 166 MADS-box Gene Family AT3G54340 37.725 2.09e-31 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01125 K09264 - gmx:100784496 293.123