Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01124 ATGGGTCGTGGGAAGATTGAGATAAAGTTGATTGAGAATCCAACAAACAGGCAAGTGACATACTCAAAGAGAAGAAATGGTATATTCAAGAAAGCTCATGAACTTAGTGTTCTTTGTGATGCTAAGGTTTCACTCATCATGTTCTCTAAAAATAACAAGATGCATGAATACATCACCCCCGGCCTTTCTACAAAGAAGATTATTGATCAGTATCAGAAGACTTTGGGAGATATTGATCTATGGCGTTCACACTATGAGAAAATGCTTGAAAACTTGAAGAAACTGAAAGATATTAACCATAAACTTAGAAGACAAATCAGGCATAGAATAGGTGAAGGTGGTATGGAATTGGAGGATCTGAGCTTCCAGCAACTTCGCAGTCTTGAAGAAGATATGAATTCTTCCATTGCAAAAATACGTGAGAGGAAGTTCCATGTGATCAAAACTAGGACTGATACCTGTAGGAAAAAGGTTAGAAGCTTGGAGCAAATGAATGGAAATCTCCTTCTAGAACTTGAAAAGTGTGTGATCCATCCACAATTTCTTTTCCACGACGAAGGAGACGAGGAATCGGCTGTTGCATTGGCCAATGGTGCTTCTACACTGTATGCATTCTGTCAGCATCATTCTCATATGAATCTTGCTCATCACCATGGAGGAGATGAAGGTTTCAAGAACGACGATCTGCGCCTTGGTTGA 699 0.3963 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYITPGLSTKKIIDQYQKTLGDIDLWRSHYEKMLENLKKLKDINHKLRRQIRHRIGEGGMELEDLSFQQLRSLEEDMNSSIAKIRERKFHVIKTRTDTCRKKVRSLEQMNGNLLLELEKCVIHPQFLFHDEGDEESAVALANGASTLYAFCQHHSHMNLAHHHGGDEGFKNDDLRLG 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01124 232 Coils Coil 85 105 - -
Trre9g01124 232 Pfam K-box region 83 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre9g01124 232 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Trre9g01124 232 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre9g01124 232 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre9g01124 232 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Trre9g01124 232 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Trre9g01124 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre9g01124 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre9g01124 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre9g01124 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Trre9g01124 232 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Trre9g01124 232 ProSiteProfiles K-box domain profile. 85 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre9g01124 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01124 Trre-Chr9 9025250 9027068 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01124 1 219 MADS-box Gene Family AT3G54340 48.182 5.45e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre9g01124 K-box 1.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01124 K09264 - gmx:100784496 396.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01124 9 9025250 9027068 Trre9g01124 9 9025250 9027068 ECH