Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01102 ATGGCAGGTTTATTTTCATTAGGAAGAAGCGAAGAACAAAATCAACAGAATAACAATAATAACAATCCAGTAACTGAATTCTGGTATAATAACAACAACAATAACAAAAATGAAGATTCAGTTTCTGCAGCATACCGTGGTGGTTTTGAGATTTGGAACGACCAGCAATTACAACACCATCAACAGCAATTCTTTCCTCTCCAGCAGCAGCAAGATCTTTACGCCGCCGCCTCGGGTGGTGTTGTGTTAGGAGTTGGACCAAGTAGGGTTTGTTCATCTGATGAGAATAGATCTGCGGTGTTTCTTGCGTCGGGAAGTGGCGGAGGGATAAGTTGTCAAGATTGTGGTAATCAAGCTAAGAAAGATTGTCCTCATGTTAGATGTAGAACTTGTTGTAAAAGTAGAGGTTTTGATTGTCAAACTCATGTTAAAAGTACTTGGGTTCCGGCTGCACGACGCCGTGAACGACAACAGCAGCAACAACAACAGCAGCAACAACAACCACATGGAGAAAGAGATCTTAACAATTCTTCTCTTGCTTGCACTCGTTTACCTATAAACCCTTCACTCACTGTCTCTCCAACAGCAACAGGGTTACTAGATGAGGTGAATTTTCCGGCGGTGGTGAGTACACCGGCAGAATTCCGGTGTGTGCGCGTTTGCTCGGTTGACGAGTCCGAGGAAGAGTATGCATATTCAACGGCTGTGAACATTGGAGGACATGTTTTCAGAGGAATTTTGTATGATTATGGTCCAGATCATCATGGGAGTAATAATTATACAATGGCTGCCGGAAACACCTCATTTAGTGGTGGTGGTGGTGGTGGTGCGGTTGTTCAGCCCTTAGAGCTTATATCTGCTGTTCCTGCTACTGCTGTTGTTGGTGTTGGGGCAATTGTTGATCCTTCTTCTTTGTATCCAGCTCCACTTAACACCTTCATGCCTCCTAGTGGTACGCAATTCTTCCCCCACCCAAGATCATCTTGA 987 0.4417 MAGLFSLGRSEEQNQQNNNNNNPVTEFWYNNNNNNKNEDSVSAAYRGGFEIWNDQQLQHHQQQFFPLQQQQDLYAAASGGVVLGVGPSRVCSSDENRSAVFLASGSGGGISCQDCGNQAKKDCPHVRCRTCCKSRGFDCQTHVKSTWVPAARRRERQQQQQQQQQQQPHGERDLNNSSLACTRLPINPSLTVSPTATGLLDEVNFPAVVSTPAEFRCVRVCSVDESEEEYAYSTAVNIGGHVFRGILYDYGPDHHGSNNYTMAAGNTSFSGGGGGGAVVQPLELISAVPATAVVGVGAIVDPSSLYPAPLNTFMPPSGTQFFPHPRSS 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01102 328 MobiDBLite consensus disorder prediction 8 25 - -
Trre9g01102 328 NCBIfam LRP1 C-terminal domain 205 252 IPR006511 -
Trre9g01102 328 MobiDBLite consensus disorder prediction 151 176 - -
Trre9g01102 328 MobiDBLite consensus disorder prediction 1 25 - -
Trre9g01102 328 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 311 IPR007818 GO:0003700|GO:0006355
Trre9g01102 328 MobiDBLite consensus disorder prediction 152 176 - -
Trre9g01102 328 NCBIfam putative zinc finger domain, LRP1 type 111 153 IPR006510 -
Trre9g01102 328 Pfam Domain of unknown function (DUF702) 109 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01102 Trre-Chr9 8854258 8856101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01102 1 314 C2H2 Transcription Factor Family AT5G66350 45.014 1.89e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Trre9g01102 DUF702 1.3e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01102 - - gmx:100814589 295.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05642 5 56520288 56521167 Trre9g01102 9 8854258 8856101 ECH
Trre9g01102 9 8854258 8856101 Trre9g01102 9 8854258 8856101 ECH