Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01094 ATGTTTGGTCGTTATGGTACCTCGTTCACAAACATTGGTTCAGCATCATCATGGTTTGAGCTATATGCTTCCTTTTCCACTTTCATGATGCTTTTTAGAACTGCAATCAATGATATCATACCCTTACAACTTAGAAATTTCATCATCATAAAGCTTAAATCTTTCTTCACAAATCACCAACCCAACAATCAAGTTTCACTTCAAATCGATCAGTTTTGGGATGGAACTACCAACGATCTTTACAATGCAGCCAAAGAATATCTTCCTACTAAAATCTCCAACACTTACAAATCCCTCAAAGTTGGGAAATTGCCCAAACATAACAACATAGTTCTAGCTTTTGATGGAAAACAAACAGTGGTAGATGAATTTGAAGACATCATGGTTAAATGGAACATTGTTGAAAAATCAAACAATGATGACGATCCTAAAAAAGAATATAAGCATAAGTATGTGGAAAATGGGTTTGTGTTAAGTTTTGATGAGAATCATAGAGATAAAATAACGGAGAAGTATCTTCCACATGTTTTAAGCACTTATGAAGCTATAAAAGCTGGACATAAAGGTCTTAAGATTCATTCTAGGGGTGATTCTATGCATTGTGGTCCATGGAAAAAAAGTGATTTAAATCACCCTGCTTCATTTGATTCACTTGCTTTAGAACCTGATTTGAAAAAAGCTATTATTGATGATTTAGATCGGTTTTTGAGGAGGAAAACATTGTATAAAAAAGTTGGTAAGCCTTGGAAACGTGGTTACCTATTGTATGGTCCACCAGGGACAGGAAAATCTAGTCTTATTGCTGCTATTGCAAAATATTTGAAATTTGATGTTTATGATTTGGATCTAAGTTCTGTGCGTTCTAACTCAGACCTTATGAGAGCTATGAGAGAGACATCTAATAGATCTATCATTGTTTTTGAAGACATTGATTGTAATTCTGAGGTGCATGATCGATCAAATATGGATTCAGATTCTGACTTACTATTTGCTAAGGTGATGGGGAATAACTTGCCTGAAAGGTTTACTCTATCTGGTTTACTTAACTTTATGGATGGATTGTGGTCAAGTTGTGGAGAGCAAAGAATTTTGATATTTACTACTAACCATAAAGACAAAGTTGATCCAGCATTATTGCGTCCGGGTCGTATGGACATGCATATCCACTTGTCTTTTCTTAAAGCTAAGGCATTCCGAATCTTAGCTTCTAATTATTTGGACATTGAAGAACATCATTACCCTCTCTTGGAACAAATTGATGAACTATTGGAAAAAGTTGAGGCCACCCCTGCAGTAGTAGCAGAGTATTTGTTGAGAAATGAGGATCCTAATGTTGCTCTTAAGGAAATTGTTAAATTTCTTCAAGAGCTTGACATTCCAAAAGTTATTGTGGATGAAGAATGTACTCAGAAAGTTTCGAGTTTCCTTGGTGGTGAAAAAATGATATTACAAATGCTTATGTAA 1464 0.349 MFGRYGTSFTNIGSASSWFELYASFSTFMMLFRTAINDIIPLQLRNFIIIKLKSFFTNHQPNNQVSLQIDQFWDGTTNDLYNAAKEYLPTKISNTYKSLKVGKLPKHNNIVLAFDGKQTVVDEFEDIMVKWNIVEKSNNDDDPKKEYKHKYVENGFVLSFDENHRDKITEKYLPHVLSTYEAIKAGHKGLKIHSRGDSMHCGPWKKSDLNHPASFDSLALEPDLKKAIIDDLDRFLRRKTLYKKVGKPWKRGYLLYGPPGTGKSSLIAAIAKYLKFDVYDLDLSSVRSNSDLMRAMRETSNRSIIVFEDIDCNSEVHDRSNMDSDSDLLFAKVMGNNLPERFTLSGLLNFMDGLWSSCGEQRILIFTTNHKDKVDPALLRPGRMDMHIHLSFLKAKAFRILASNYLDIEEHHYPLLEQIDELLEKVEATPAVVAEYLLRNEDPNVALKEIVKFLQELDIPKVIVDEECTQKVSSFLGGEKMILQMLM 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01094 487 SMART AAA_5 249 394 IPR003593 GO:0016887
Trre9g01094 487 Gene3D - 389 457 - -
Trre9g01094 487 ProSitePatterns AAA-protein family signature. 362 380 IPR003960 GO:0005524|GO:0016887
Trre9g01094 487 PANTHER BCS1 AAA-TYPE ATPASE 22 455 - -
Trre9g01094 487 Pfam ATPase family associated with various cellular activities (AAA) 254 390 IPR003959 GO:0005524|GO:0016887
Trre9g01094 487 CDD RecA-like_BCS1 228 390 - -
Trre9g01094 487 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 443 IPR027417 -
Trre9g01094 487 Pfam Domain associated at C-terminal with AAA 40 134 IPR025753 -
Trre9g01094 487 Gene3D - 206 388 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01094 Trre-Chr9 8765708 8767715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01094 251 390 Calmodulin-binding Proteins AT3G56690 31.293 1.29e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01094 - K08900 gmx:100787726 587.03