Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01074 ATGGAGAAAACACGACTAAATAACCTATTTCCTCTAACTCCAAGTTCAACATTCTCAACCAAGAAAGGACGGAGTGGATATGAACCATCAGACACAGAGACAGAGTGGCAAGATACTCCACGTTACGAACGAGGAGGAAGAAAGAACGTGACTTTGAGTCCCGAAGAAACAAGAGTTACGTCTGTAAGGAACAAAAGTCCTATGACTCTCCACAAGAGACGCCCTTCAAGGTTTGAATTTGAAGTCCCACCATCACCTTCGGTAACAGGTTCAGTTCTTAGCCAACCAAGAAGAAGACACCACAGCAAGTCGCCCTATAGGCCACACATAGCACAGAATGGTGGTAATAATGATGATGATGATGATGATTCTTTGTCGTATATAACAGGTTTGAATTCACGTAGAAATACAAGTCCTTTGCCAAGACCTGACTTTGGAAGAACATTGTCTCCTTATAACCGAACTCATGAACAAAGAATACCTTCAAATGAAAACAGAAAAGCAAGCTCGGGACTTCTGGAAGTGGATAGAGCGGGTACAAAACCAAACTACAGGAGAGCAGTGACTGCTCCAAGATTGAGGGACCAAGAACAAACATCGCAAAACACGAGAATGCTGAAACAAAGGGAAAAATCTCCTTTCAAAACAGGTCCAGTTAGAGAAAGAGAAATCAATGAAATGATAGCACAGGTGAAGCTATCAAAAAACCCTACTGATGATTATTCATCGGCCCTGGAAAGTACAGACTCAGTTCAAACAGGTGATCTTTTCTTTTCTCGCGAATGCAATGCCTTGCAAGCAAAGAATTCTTCATTGCCTATAAAAGTACAACAATACGGGTATTTTAGCCCAAGACCAGTGATCACCGACATAAATTCCATTAGCAACCCCTCTGAAATTAGGGGTAACCTCAATAAGAATATGCCAAGAAACTCATCCAGTAATGTGTTGTTGTCTCGAACAACGAGGGTCACATCAATCAGAAAGGGAAGTGGAACTGGGAAGACTCATACCAATCCTAGTGTTAAAAGTGATGCTAGTGCAAAGACAACTGACAGCATGAGGAAATTCACATCCAACAGAAAAAAGAACCAGAAAGATGCATGGTTTGCTTGTATGAGAACAGGAAACTGTAAGATCTCAAGAAAATCACCTGAACGTAAGCCAATTGACGAAGCTTCATTGATTGAGAGAGCAATAATTGTGGAAAGCATTCCACAGTTCTGGGCAGATAAACATCAGCCTGCTTCACTAGATGGCTTCATTTGCAACAAACAAGAAGCTCAACTTCTCAAGGAACTAGTATCATCACAGGGATCTTGTCCTCACATTTTACTTAAAGGACCCTCTGGTTCTGAGAAAAGAGAACTAGCAATGGCTCTTCTTCGAGAAATATATGGTGATGCATGTTCTAATCTATCACATGATTTAAGGCATTTCCCTATTCAGGACAAAAGGACTATGAAAGTATCGGTTCCAATCACGTCCAGCTCTCATCACATGGAGCTCAATGTAAATTCAGAACCAAATGCTAAATATGCTTTGATGGGATTAATCAAAGAAATTAGCAATATATATGCAATTACCCCTGAAGTAAGCAATATGAATTTCAAATCAGATTATAAAGTAATAATTCTTTACGAGGTCGACAAAGCTGTAGAGAACATCCAACACTTGATCAAATGGATCATAGACCGTTACTCAGATATATGCAAATTAGTTATCTGCTGTGAGGATGATGAAAACATAATTGCATCTGTGAAAAACCGGTTCAAAGTTATCAATGTTGATGCTCCTCAAACTCATGAAATAGCAAATAAAGAGGAAATTGATCTATCCATGAATTTTGCTATGAAGATTGCTACAAAATCAAAGCAGAACCTCAGGGAAGCAATCTTGGCTCTTGAAGCATGCAAAGCACACAACTATCCATTTTCAGAAGAACAACCAATTCCTGTTGGATGGGAGAAGATTGTAATAGAAGTTTCTGTAGAGATCCTAACTGATCCATCATTTTCACGCTTACTCTCAATACGAGGGAAATTTCAAATGCTTCTTCTGGATTTTGTCCACCCTAGATTGATTCTCCTGAAACTTGTGGAGCAGCTCCTAAGAAGAACTGAGGCTGGCTTAAAAAGGGAGCTCTACTATTGGCATGCTTATTATGACAGAAAACTCCCACCAGGAACAACAGCTTTACTAAAATTAGAAGAATTTGTGGCCAAGTTCATGAGCATTTGCAGAAGAAACTCAGTCAGTAGGCAATATGTGTAG 2274 0.3971 MEKTRLNNLFPLTPSSTFSTKKGRSGYEPSDTETEWQDTPRYERGGRKNVTLSPEETRVTSVRNKSPMTLHKRRPSRFEFEVPPSPSVTGSVLSQPRRRHHSKSPYRPHIAQNGGNNDDDDDDSLSYITGLNSRRNTSPLPRPDFGRTLSPYNRTHEQRIPSNENRKASSGLLEVDRAGTKPNYRRAVTAPRLRDQEQTSQNTRMLKQREKSPFKTGPVREREINEMIAQVKLSKNPTDDYSSALESTDSVQTGDLFFSRECNALQAKNSSLPIKVQQYGYFSPRPVITDINSISNPSEIRGNLNKNMPRNSSSNVLLSRTTRVTSIRKGSGTGKTHTNPSVKSDASAKTTDSMRKFTSNRKKNQKDAWFACMRTGNCKISRKSPERKPIDEASLIERAIIVESIPQFWADKHQPASLDGFICNKQEAQLLKELVSSQGSCPHILLKGPSGSEKRELAMALLREIYGDACSNLSHDLRHFPIQDKRTMKVSVPITSSSHHMELNVNSEPNAKYALMGLIKEISNIYAITPEVSNMNFKSDYKVIILYEVDKAVENIQHLIKWIIDRYSDICKLVICCEDDENIIASVKNRFKVINVDAPQTHEIANKEEIDLSMNFAMKIATKSKQNLREAILALEACKAHNYPFSEEQPIPVGWEKIVIEVSVEILTDPSFSRLLSIRGKFQMLLLDFVHPRLILLKLVEQLLRRTEAGLKRELYYWHAYYDRKLPPGTTALLKLEEFVAKFMSICRRNSVSRQYV 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01074 757 FunFam replication factor C subunit 3 602 651 - -
Trre9g01074 757 Gene3D - 407 599 IPR027417 -
Trre9g01074 757 Gene3D - 601 651 - -
Trre9g01074 757 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 409 736 - -
Trre9g01074 757 MobiDBLite consensus disorder prediction 193 207 - -
Trre9g01074 757 MobiDBLite consensus disorder prediction 324 362 - -
Trre9g01074 757 MobiDBLite consensus disorder prediction 8 25 - -
Trre9g01074 757 MobiDBLite consensus disorder prediction 151 169 - -
Trre9g01074 757 Gene3D - 654 747 - -
Trre9g01074 757 MobiDBLite consensus disorder prediction 324 354 - -
Trre9g01074 757 SUPERFAMILY post-AAA+ oligomerization domain-like 654 746 IPR008921 GO:0003677|GO:0006260
Trre9g01074 757 MobiDBLite consensus disorder prediction 1 215 - -
Trre9g01074 757 FunFam Replication factor C subunit 3 407 599 - -
Trre9g01074 757 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 403 638 IPR027417 -
Trre9g01074 757 MobiDBLite consensus disorder prediction 26 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01074 Trre-Chr9 8542653 8546350 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01074 408 753 Core DNA Replication Machinery Family AT5G27740 36.798 1.24e-71 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01074 K10756 - gmx:100795321 983.786