Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01069 ATGGGAGGTGCCTTTTGGCGGCGAGTAATAAATAAAGGGAATCTGAACTCTTGTACATCGGTTACACTTTCTTTCTTCTCTTCTGTCCTGACTGTGTTAAAATCCTCTTTTGTGACGGACAAGGTGAAGGAAAGATGTCAAGACCAAATGCTGGCTGTTGAACAAATAAATGATTATATGCTCAAGTTACTACCAGGTGAAGGAATGGAGTACTATAGTGCTGATTATATTGATATCTTCAAAGAGGTTTTCGAAAACCTTAACAACCAGGAAGAAAACAAAAACCATGATCTGCGTGCCTTTCTCGATGAACTCTCCAATGCTACACCTGAAACTAGTATCAAAGTGAGGGTAGCAAGGATGTGGGACACACTTAATCTAAACAAACAGAAGGGTTTGATCAGTACAGATATGGTACTGATTGATGAAAAGGCAAACTACATTCATGCTACAACACCAAGGTGGGATTCACCTAAGATAAAAACAAAGTTGCAAGAAGGCAAGGTATATGTCATTTCCAAATTCGAGGTCTCAGAAAATAGACAAAGGTATGCAGTGGTTGAAAGAAATTCTTTAGAGTTGCACTTACCTGGTGACGTAACAGTAATTGAGGAGGACTGTGGTGACATCGAAATACCACGCCATATTTTTGAGTTTGTTGATTTTGACAATCTGCCCAAACGTAATGGAAAACAAGTTTATTCAGATGTGATTGGAGTTGTAACATGTGTAAATCCAATTGAAGAAAGGACAACTGTCAACGGAAAGGTTGATATGATGTCGCTTCAATTGAAAAATGGAAGGGGAGACGTATTCAAGGTCACGTTGTGGGATGAATATGTAGCGATATTTAACCAGACATTGAAGGAACAGATGTATGATGCTCCTAAACCAAATGTGGCAATCTTCACCTCCGTCACGGTTAAACAGTACCAAGGGGATCTTTTAGCTCAATCTTCAAGGTCCACAAAAATTTATGTCAACATCGACATTCCCGAAGTTGATGACCTCATCCGATCATTCAGGTGA 1029 0.3946 MGGAFWRRVINKGNLNSCTSVTLSFFSSVLTVLKSSFVTDKVKERCQDQMLAVEQINDYMLKLLPGEGMEYYSADYIDIFKEVFENLNNQEENKNHDLRAFLDELSNATPETSIKVRVARMWDTLNLNKQKGLISTDMVLIDEKANYIHATTPRWDSPKIKTKLQEGKVYVISKFEVSENRQRYAVVERNSLELHLPGDVTVIEEDCGDIEIPRHIFEFVDFDNLPKRNGKQVYSDVIGVVTCVNPIEERTTVNGKVDMMSLQLKNGRGDVFKVTLWDEYVAIFNQTLKEQMYDAPKPNVAIFTSVTVKQYQGDLLAQSSRSTKIYVNIDIPEVDDLIRSFR 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01069 342 Gene3D - 210 342 IPR012340 -
Trre9g01069 342 SUPERFAMILY Nucleic acid-binding proteins 102 189 IPR012340 -
Trre9g01069 342 SUPERFAMILY Nucleic acid-binding proteins 217 341 IPR012340 -
Trre9g01069 342 CDD RPA1_DBD_A_like 113 189 - -
Trre9g01069 342 PANTHER OS03G0429900 PROTEIN 80 340 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre9g01069 342 Coils Coil 88 108 - -
Trre9g01069 342 CDD RPA1_DBD_B_like 236 341 - -
Trre9g01069 342 Pfam Replication protein A OB domain 233 323 IPR031657 -
Trre9g01069 342 Gene3D - 101 204 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01069 Trre-Chr9 8523563 8527355 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01069 113 337 Core DNA Replication Machinery Family AT2G06510 30.303 2.08e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01069 - - mtr:120580096 312.768