Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01056 ATGAGGGATGGGATTGGTAATACGTCGAGACGAGGTGCAGGAAGTAGGCTTTCACAGCGTCGGACAAAGTCGCACATTGTTCCTGATATCACTTTAACATCACTTGAACCTATTGAGCAAGGACAATGGGCTAATATACCATCCGAATTGCTTCTTGATATAATTCGGAGGGTAGAAGAGACTGAGACTTCTTGGCCTGCACGTGCTGTTGTCGTTGCTTGTGCTTCCGTGTGTAAATCTTGGAGGGCCGTTACAAAAGAGATTGTCCAGACTCCCGAACAGTGCGGAAGGTTGACATTTCCTATTTCATTAAAGCAGCCGGGTCCTCGCGATTCTCCAATACAGTGCTTCATCAGGAGGGATAGAGAAACTTCTGCATATCTCTTGTACTATGGATTGGTGCCATCGGAAAATGAGACTGATAAGCTGTTATTAGTTGCAAAAAAGATAAGGAGGGCAACTGGCACAGACTTCATCATATCTTTGGTTGCAGATGATTTTTCTCGATCCAGCAATGCATATGTTGGAAAACTCAGGTCTAATTTTTTGGGTACCAAATTCACTATATATGACAGCCAACCTCCACATGGAGCTGGAATTCCACCAAAAAGTACTAGGTCTAGTAGGAGATTTCATTCTAAGCAGGTATCTCCAAGAGTTCCAGCATGTAACTATATTGTTAGCACCATTACCTATGAGCTGAATGTTCTCCGCACAAGAGGACCAAGAAGAATGAACTGCATCATGAACTCGATACCTGTCTCAGCTGTTCAGGAAGGGGGCACTGCCCCGACTCCTACATCTTTTCCTGAAATTACCGATGAGCATTTTTGTTCTGCGCCAGCACTAGCACCAGCACCAAAAGGTAAAGGTCCAGTTGGAGATTTAAGCAATTCAACCCTCCCAGTCCCTGAGATGCCGGTACAGAACCAAGGCCCAGTTGAGTCTCTGGTACTTAAAAACAAGTCTCCAAGATGGCATGAGCAGCTGCAATGCTGGTGCTTAAACTTCAAGGGTCGCGTTACAGTGGCTTCGGTCAAGAACTTTCAACTTGTGGCTGCTGTTGAGCCATCTCATAATGTTTCTGCTGCGGAGCAAGAAAAGGTTATCTTGCAGTTTGGAAAGATTGGAAAAGATATATTTACTATGGATTACCGTTATCCACTCTCTGCCTTCCAAGCCTTTGCAATATGCTTGAGCAGCTTTGATACAAAACCAGCCTGTGAATGA 1230 0.4463 MRDGIGNTSRRGAGSRLSQRRTKSHIVPDITLTSLEPIEQGQWANIPSELLLDIIRRVEETETSWPARAVVVACASVCKSWRAVTKEIVQTPEQCGRLTFPISLKQPGPRDSPIQCFIRRDRETSAYLLYYGLVPSENETDKLLLVAKKIRRATGTDFIISLVADDFSRSSNAYVGKLRSNFLGTKFTIYDSQPPHGAGIPPKSTRSSRRFHSKQVSPRVPACNYIVSTITYELNVLRTRGPRRMNCIMNSIPVSAVQEGGTAPTPTSFPEITDEHFCSAPALAPAPKGKGPVGDLSNSTLPVPEMPVQNQGPVESLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVEPSHNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01056 409 ProSitePatterns Tub family signature 1. 337 350 IPR018066 -
Trre9g01056 409 PANTHER TUBBY-RELATED 39 407 - -
Trre9g01056 409 MobiDBLite consensus disorder prediction 194 213 - -
Trre9g01056 409 ProSitePatterns Tub family signature 2. 394 409 IPR018066 -
Trre9g01056 409 MobiDBLite consensus disorder prediction 1 22 - -
Trre9g01056 409 Gene3D - 36 92 - -
Trre9g01056 409 SUPERFAMILY Tubby C-terminal domain-like 92 409 IPR025659 -
Trre9g01056 409 CDD F-box_AtTLP-like 43 87 - -
Trre9g01056 409 Gene3D Tubby Protein; Chain A 101 409 IPR025659 -
Trre9g01056 409 PRINTS Tubby superfamily signature 387 409 IPR000007 -
Trre9g01056 409 PRINTS Tubby superfamily signature 174 198 IPR000007 -
Trre9g01056 409 PRINTS Tubby superfamily signature 319 336 IPR000007 -
Trre9g01056 409 PRINTS Tubby superfamily signature 366 385 IPR000007 -
Trre9g01056 409 PRINTS Tubby superfamily signature 337 353 IPR000007 -
Trre9g01056 409 PRINTS Tubby superfamily signature 158 174 IPR000007 -
Trre9g01056 409 PRINTS Tubby superfamily signature 224 251 IPR000007 -
Trre9g01056 409 Pfam F-box domain 43 90 IPR001810 GO:0005515
Trre9g01056 409 SUPERFAMILY F-box domain 38 87 IPR036047 GO:0005515
Trre9g01056 409 Pfam Tub family 104 404 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01056 Trre-Chr9 8455686 8457850 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01056 1 409 TUB Transcription Factor Family AT2G18280 61.858 2.23e-174 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Trre9g01056 Tub 3.2e-106 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01056 9 8455686 8457850 Trre9g01056 9 8455686 8457850 ECH
Trre15g04076 15 51271392 51273061 Trre9g01056 9 8455686 8457850 ECH
Trre9g01056 9 8455686 8457850 Trre15g04076 15 51271392 51273061 PCT