Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01055 ATGTCGTTGAGAAGCATAGTTCGGGAACTCAAGGAAATGAGGGATGGGATTGGTAATACGTCGAGACGAGGTGCAGGAAGTAGGCTTTCACAGCGTCGGACAAAGTCGCACATTGTTCCTGATATCACTTTAACATCACTTGAACCTATTGAGCAAGGACAATGGGCTAATATACCATCCGAATTGCTTCTTGATATAATTCGGAGGGTAGAAGAGACTGAGACTTCTTGGCCTGCACGTGCTGTTGTCGTTGCTTGTGCTTCCGTGTGTAAATCTTGGAGGGCCGTTACAAAAGAGATTGTCCAGACTCCCGAACAGTGCGGAAGGTTGACATTTCCTATTTCATTAAAGCAGCCGGGTCCTCGCGATTCTCCAATACAGTGCTTCATCAGGAGGGATAGAGAAACTTCTGCATATCTCTTGTACTATGGATTGGTGCCATCGGAAAATGAGACTGATAAGCTGTTATTAGTTGCAAAAAAGATAAGGAGGGCAACTGGCACAGACTTCATCATATCTTTGGTTGCAGATGATTTTTCTCGATCCAGCAATGCATATGTTGGAAAACTCAGGTCTAATTTTTTGGGTACCAAATTCACTATATATGACAGCCAACCTCCACATGGAGCTGGAATTCCACCAAAAAGTACTAGGTCTAGTAGGAGATTTCATTCTAAGCAGGTATCTCCAAGAGTTCCAGCATGTAACTATATTGTTAGCACCATTACCTATGAGCTGAATGTTCTCCGCACAAGAGGACCAAGAAGAATGAACTGCATCATGAACTCGATACCTGTCTCAGCTGTTCAGGAAGGGGGCACTGCCCCGACTCCTACATCTTTTCCTGAAATTACCGATGAGCATTTTTGTTCTGCGCCAGCACTAGCACCAGCACCAAAAGGTAAAGGTCCAGTTGGAGATTTAAGCAATTCAACCCTCCCAGTCCCTGAGATGCCGGTACAGAACCAAGGCCCAGTTGAGTCTCTGGTACTTAAAAACAAGTCTCCAAGATGGCATGAGCAGCTGCAATGCTGGTGCTTAAACTTCAAGGGTCGCGTTACAGTGGCTTCGGTCAAGAACTTTCAACTTGTGGCTGCTGTTGAGCCATCTCATAATGTTTCTGCTGCGGAGCAAGAAAAGGTTATCTTGCAGTTTGGAAAGATTGGAAAAGATATATTTACTATGGATTACCGTTATCCACTCTCTGCCTTCCAAGCCTTTGCAATATGCTTGAGCAGCTTTGATACAAAACCAGCCTGTGAATGA 1266 0.4463 MSLRSIVRELKEMRDGIGNTSRRGAGSRLSQRRTKSHIVPDITLTSLEPIEQGQWANIPSELLLDIIRRVEETETSWPARAVVVACASVCKSWRAVTKEIVQTPEQCGRLTFPISLKQPGPRDSPIQCFIRRDRETSAYLLYYGLVPSENETDKLLLVAKKIRRATGTDFIISLVADDFSRSSNAYVGKLRSNFLGTKFTIYDSQPPHGAGIPPKSTRSSRRFHSKQVSPRVPACNYIVSTITYELNVLRTRGPRRMNCIMNSIPVSAVQEGGTAPTPTSFPEITDEHFCSAPALAPAPKGKGPVGDLSNSTLPVPEMPVQNQGPVESLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVEPSHNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01055 421 ProSitePatterns Tub family signature 2. 406 421 IPR018066 -
Trre9g01055 421 MobiDBLite consensus disorder prediction 206 225 - -
Trre9g01055 421 Gene3D - 48 104 - -
Trre9g01055 421 Gene3D Tubby Protein; Chain A 113 421 IPR025659 -
Trre9g01055 421 CDD F-box_AtTLP-like 55 99 - -
Trre9g01055 421 Pfam Tub family 116 416 IPR000007 -
Trre9g01055 421 PANTHER TUBBY-RELATED 50 419 - -
Trre9g01055 421 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Trre9g01055 421 PRINTS Tubby superfamily signature 331 348 IPR000007 -
Trre9g01055 421 PRINTS Tubby superfamily signature 378 397 IPR000007 -
Trre9g01055 421 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Trre9g01055 421 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Trre9g01055 421 PRINTS Tubby superfamily signature 349 365 IPR000007 -
Trre9g01055 421 PRINTS Tubby superfamily signature 399 421 IPR000007 -
Trre9g01055 421 Pfam F-box domain 55 102 IPR001810 GO:0005515
Trre9g01055 421 SUPERFAMILY F-box domain 50 99 IPR036047 GO:0005515
Trre9g01055 421 ProSitePatterns Tub family signature 1. 349 362 IPR018066 -
Trre9g01055 421 SUPERFAMILY Tubby C-terminal domain-like 104 421 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01055 Trre-Chr9 8455686 8457886 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01055 1 421 TUB Transcription Factor Family AT2G18280 62.233 0.0 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Trre9g01055 Tub 3.5e-106 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01055 K19600 - gmx:100778290 695.271