Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01054 ATGAGAACAACTAGTGGTGAAAAAGTGGAGACTTTACTAAATATCCGCTCCTTTCAGGCACATAGTAAAATATGCATAGAACTGATGAATATAGTGGAAAGCATCATGAGGATACTTCCAGACATAGAGGCAGCAAGGCCAAGATGCTCATCAGGAATAGAGTCTCTATGTTTGCTGCACAACTCAATTGAGAAAGCCAGATTACTTCTGCAACATTGTTCCGAATGCAGCAAACTCTACCTGGCTGTGACAGGTGATACAGTACTTACAAGATGCCTAAAGGCAAAAAAGTCATTAGAACAAAGCTTAATTCCCATTCAGGGTATGGTTCCAGTTCTATTGGCTGTAGAGGTTTCTAGAATAATCGATGATCTTGAATGTGCTACATTTGTTCTGGACTATGCTGAAGAAGAGGCTGGGAAAGTTTTAAGAGAACTGCTGAGTACTTCAAATTCAGATTCTGTGGAAGATTTTGAACTTAAAGCACTTCAGTTTGCAGCACCAAGATTGAATATAACATCACAAAGGGCCTTATTAGTCGAGAGACGGTCAATCCAGAAGTTGATGGAAAAAATTGGACAAAATGACCCGAAAAAGTGGAAGATCTTGAGATATCTTATGTATCTATTGAAAAAGCATGGAAAGTACATGGTGGCAGGAGAACACATAGAGAATTTTTATTCTCGTAGAGAAGAAGCAATTGCAAGGGATAACTCTAGTCACGATTCTCTACGAAGCAATCGCGTTGAGTCGGAACGTAGCATGAACTATGATCAGAATAGAACTCACATGAATCAGTCGGATAGAGTGACACCGCCTGAGGAATATAAGTGTCCAATATCCTTAAGATTGATGTATGATCCTGTTATCATTGCTTCTGGAGTAACATATGAAAGAATGTGGATAACAAAGTGGTTTAATGAAGAAAAAACTACATGTCCAAAAACAAAAATGGAACTATCTCATATGGAATTGACTCCAAATGTTGCCATGAAGGACATAATATCAAAGTGGTGCAGAAATAACGGTGTCTCCATACCTGATCCAAGTAGACATACAGAAGATTTTCACTTAATGGATGCTTCAATCACCTCCATCAAGAGTTTGGGAAGTTATTTCAATGATTTGAACTTGCCAATGGATTTTAGTAACATGTCACTTGGATCATTGGATACTAGTTTTAATTCAGATGTGTCACGAGTTCAGCCCAATCATGACTTGAATTTGATGATGGCCAGGAGCGCTGAAAACGCCCAGCCTCACATGCAAAGAGCTCATGTACCAGAGATACATGATTCAGATTTGATGCTCTTGCCTAAACTTCATGATCTTCAATGGGATTCTCAATGTAAGGTCATTGAAGATTTGAAAGATCATATGAAAAGCAACAGCCAAGCTATTTCGTCTGTGTCAGCTGAAAATTTAGTTGAACCAGTAGTCAGGTTTTTGTGCAATGCAATTGATTTGCAGGACGTAAAAGCACTGAAAGACGGAACTCAGCTGCTGTTGGAATTTGTGAACAACTGCAGAAATGGTATGGCTGACATAAGTGAAGATACATTCATAAAGTTGGCAAATCTTCTTGATTCAGAAGTGATAGGAGAAGTACTTGCCATAATGGAAGAACTTTCCGGAGATGGAAATAGTAAAGCCAAAATTGCAGCATCCGGTGCACTCACTTCTGTCTTAAAGTTGCTTGATTCTGATAGCAAAGAGTTCCAACAAAAAGCTATAAGAACAATCTACAATTTGTCCTTCGATATTCAAGTTTGTCCACACATGGTATCTCTTAAATGCATCCCAAAATTGCTTCCATTTTTCAACGACAGATCGGTTTTGAGATACTGCATATATATATTGAAAAACATGTGTGACACTGAAGAGGGTAGAAACTCAATTGCTGAAACTAGAGGATGCATATCTTCTATTGCTGAAATACTTGACACTGGAAGTAATGAGGAGCAAGAACATGCACTTTCTATTCTACAATCTTTATGTTCATGCTCCCGAAGTGTGGATTATTGTAAATTGATTTTGGATGAGGATGAGAATATCATCACTACTCTTTTCTATATCTCACAGAATGGAAATGATAAAGGAAAGGAAAGTGCCTTGGAATTGATTCAACTTTTGAAAGATGCTAAAGATGTTGAGAATGAAGATAATCGATCCTCTCGACCAATTACCAACAACACTTCTGGAGAATCCAGCAGTCACGCTGAAGAAAATAGATCATCGAAAAGATCGCCATTTCTGAAGAAACTAGGATTGTTCTCAAAAAACAAAAGGTGA 2292 0.3805 MRTTSGEKVETLLNIRSFQAHSKICIELMNIVESIMRILPDIEAARPRCSSGIESLCLLHNSIEKARLLLQHCSECSKLYLAVTGDTVLTRCLKAKKSLEQSLIPIQGMVPVLLAVEVSRIIDDLECATFVLDYAEEEAGKVLRELLSTSNSDSVEDFELKALQFAAPRLNITSQRALLVERRSIQKLMEKIGQNDPKKWKILRYLMYLLKKHGKYMVAGEHIENFYSRREEAIARDNSSHDSLRSNRVESERSMNYDQNRTHMNQSDRVTPPEEYKCPISLRLMYDPVIIASGVTYERMWITKWFNEEKTTCPKTKMELSHMELTPNVAMKDIISKWCRNNGVSIPDPSRHTEDFHLMDASITSIKSLGSYFNDLNLPMDFSNMSLGSLDTSFNSDVSRVQPNHDLNLMMARSAENAQPHMQRAHVPEIHDSDLMLLPKLHDLQWDSQCKVIEDLKDHMKSNSQAISSVSAENLVEPVVRFLCNAIDLQDVKALKDGTQLLLEFVNNCRNGMADISEDTFIKLANLLDSEVIGEVLAIMEELSGDGNSKAKIAASGALTSVLKLLDSDSKEFQQKAIRTIYNLSFDIQVCPHMVSLKCIPKLLPFFNDRSVLRYCIYILKNMCDTEEGRNSIAETRGCISSIAEILDTGSNEEQEHALSILQSLCSCSRSVDYCKLILDEDENIITTLFYISQNGNDKGKESALELIQLLKDAKDVENEDNRSSRPITNNTSGESSSHAEENRSSKRSPFLKKLGLFSKNKR 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01054 763 PANTHER U BOX DOMAIN-CONTAINING 26 719 - -
Trre9g01054 763 ProSiteProfiles U-box domain profile. 271 345 IPR003613 GO:0004842|GO:0016567
Trre9g01054 763 SMART arm_5 587 625 IPR000225 GO:0005515
Trre9g01054 763 SMART arm_5 626 667 IPR000225 GO:0005515
Trre9g01054 763 SMART arm_5 546 586 IPR000225 GO:0005515
Trre9g01054 763 MobiDBLite consensus disorder prediction 724 739 - -
Trre9g01054 763 MobiDBLite consensus disorder prediction 716 763 - -
Trre9g01054 763 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 345 IPR013083 -
Trre9g01054 763 Pfam Kinesin-associated protein (KAP) 535 659 - -
Trre9g01054 763 SUPERFAMILY RING/U-box 267 349 - -
Trre9g01054 763 Gene3D - 437 722 IPR011989 -
Trre9g01054 763 Pfam U-box domain 273 342 IPR003613 GO:0004842|GO:0016567
Trre9g01054 763 MobiDBLite consensus disorder prediction 237 272 - -
Trre9g01054 763 CDD RING-Ubox_PUB 273 325 IPR045210 -
Trre9g01054 763 MobiDBLite consensus disorder prediction 237 257 - -
Trre9g01054 763 SUPERFAMILY ARM repeat 437 711 IPR016024 -
Trre9g01054 763 SMART Ubox_2 275 338 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01054 Trre-Chr9 8450714 8454030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01054 16 761 U-box Gene Family AT4G36550 37.206 3.65e-143 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01054 - - psat:127120233 1172.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01054 9 8450714 8454030 Trre9g01054 9 8450714 8454030 ECH
Trre15g04072 15 51246170 51249352 Trre9g01054 9 8450714 8454030 ECH
Trre9g01054 9 8450714 8454030 Trre15g04072 15 51246170 51249352 PCT