Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01050 ATGTCAACAACAACAACAACAACTTTAGGTTACAATAGAGATTCTTCTTCTTCTTCACCACCTCAAAATCACACATTAATCTTCAATAATCAAACTCAATTTTCACATAATCATCTTCATCCAGATCCAGATCTAACCGTTACAACAACAATAGCACCACCACTTCCACCACCACTACCACCACAACAACAACAACAACAACAAACAAAAACATGTTACCGAGAATGTCTGAGAAACCACGCGGCAAGCATAGGAAGCCACGTGGTAGATGGATGTGGAGAATTCATGCCAAGTGGTGAAGAAGGTACACCACAATCCTTCTTATGTGCCGCTTGTAACTGTCACCGTAATTTCCACCGAAAACATATCCAACAACAAACACAAAATGTTGAAAATGTTTATGTTTCTAATTTTCAAACACCTTCATCATCATCTCAAAGATTTTCACAACATCCTAATTCACAACAAGCTATTGTTGTTCCACCGTTGATGATGAATTTTGGATCAGGAGGAGTAGCAGCAGAATCATCAAGTGAAGATCTAAACATATCAGGTGGAGAATTTTCAATTCAGAATCAGAATCAGCAGCAGAAGAAACCGGTTTTAAAGAAGAGGATAAGAACGAAATTCTCGCAGGAACAAAAGGATAAGATGATGGAGTTTGGTGAAAAAATTGGATGGAAGATTCAAAAACATGATGAACATGAAGTTCAACAGTTTTGTTCACAAGTTGGTATTAAGAGACATGTTTTTAAAGTTTGGATGCATAATAACAAACAAGCTATGAAGAAGAAACAACAACAACAACAACAAATGTAA 819 0.3651 MSTTTTTTLGYNRDSSSSSPPQNHTLIFNNQTQFSHNHLHPDPDLTVTTTIAPPLPPPLPPQQQQQQQTKTCYRECLRNHAASIGSHVVDGCGEFMPSGEEGTPQSFLCAACNCHRNFHRKHIQQQTQNVENVYVSNFQTPSSSSQRFSQHPNSQQAIVVPPLMMNFGSGGVAAESSSEDLNISGGEFSIQNQNQQQKKPVLKKRIRTKFSQEQKDKMMEFGEKIGWKIQKHDEHEVQQFCSQVGIKRHVFKVWMHNNKQAMKKKQQQQQQM 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01050 272 NCBIfam homeobox domain, ZF-HD class 203 260 IPR006455 -
Trre9g01050 272 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 73 122 IPR006456 -
Trre9g01050 272 FunFam Zinc-finger homeodomain protein 2 190 264 - -
Trre9g01050 272 SUPERFAMILY Homeodomain-like 198 264 IPR009057 -
Trre9g01050 272 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 49 261 - -
Trre9g01050 272 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 73 122 IPR006456 -
Trre9g01050 272 MobiDBLite consensus disorder prediction 1 25 - -
Trre9g01050 272 Gene3D - 188 265 - -
Trre9g01050 272 Pfam ZF-HD protein dimerisation region 71 123 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01050 Trre-Chr9 8415742 8416560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01050 54 265 ZF-HD Transcription Factor Family AT2G18350 52.055 1.65e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Trre9g01050 ZF-HD_dimer 1.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01050 - - mtr:11413632 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01050 9 8415742 8416560 Trre9g01050 9 8415742 8416560 ECH