Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01043 ATGATGCATCATGTTTCTTCTTCTTGCAATGGTTCAACTCACGTGATGGGACACTGTACATGTGGTATGTTTCATGGACAAAACAATAATAATTCTTCATTATCAATGTTATTCTCTAAACCTTATGATGAAACTTCATCATCTTCTTCTTCTTCTTCTGTTGATTGTACTCTTTCTCTTGGAACACCATCCACTCGTTTTACTGAAGATGAAGAGAAAAGAAACCGTTGTTCTGTTAAAAACTTTTGCTGGGATTTACTTACTCCTAAACAGTACAACAGTGTTCAGTCTCAAACTAAGGTATCACGTGCAAACATCAACAACAACAATGATTCTCTTCTTGCTCGTAGATGTGCTAACTGTGACACTACCTCTACACCTCTTTGGAGAAATGGCCCTCGTGGCCCTAAGTCATTGTGCAATGCTTGTGGGATTAGATTCAAGAAAGAAGAGAGAAGAGCAACCGCAGCCGCCACCACACCGACAGTCGCATCCATTGGTGTAATGGAACCAACTCCGATGTATAACCACCACCACAATAACAACTCATGGTATGTACATCAACAAAATCAAAAGATGCAATGCTTCACTCCGGCAATGAGTAATGAGTTTCGCTTCATCGATGAAACTGATCGTGATTCCGAAAATGGCATCCCCTTTCTCTCTTGGAGACTCAATGTCACTGATAGAACAAGCTTTGTTCATGACTTTACTAGATGA 720 0.4014 MMHHVSSSCNGSTHVMGHCTCGMFHGQNNNNSSLSMLFSKPYDETSSSSSSSSVDCTLSLGTPSTRFTEDEEKRNRCSVKNFCWDLLTPKQYNSVQSQTKVSRANINNNNDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRATAAATTPTVASIGVMEPTPMYNHHHNNNSWYVHQQNQKMQCFTPAMSNEFRFIDETDRDSENGIPFLSWRLNVTDRTSFVHDFTR 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01043 239 ProSitePatterns GATA-type zinc finger domain. 118 143 IPR000679 GO:0006355|GO:0043565
Trre9g01043 239 SMART GATA_3 112 166 IPR000679 GO:0006355|GO:0043565
Trre9g01043 239 ProSiteProfiles GATA-type zinc finger domain profile. 112 148 IPR000679 GO:0006355|GO:0043565
Trre9g01043 239 Gene3D - 114 194 IPR013088 GO:0006355|GO:0008270
Trre9g01043 239 PANTHER GATA TRANSCRIPTION FACTOR 18 13 239 IPR044272 GO:0003700|GO:0009908
Trre9g01043 239 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 115 159 - -
Trre9g01043 239 CDD ZnF_GATA 117 149 IPR000679 GO:0006355|GO:0043565
Trre9g01043 239 Pfam GATA zinc finger 118 152 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01043 Trre-Chr9 8310323 8311844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01043 20 239 C2C2-Gata Transcription Factor Family AT3G50870 44.718 6.68e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre9g01043 GATA 5.7e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01043 - - mtr:11405635 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01043 9 8310323 8311844 Trre9g01043 9 8310323 8311844 ECH
Trre9g01043 9 8310323 8311844 Trre15g04060 15 51124593 51125441 PCT