Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01029 ATGGATGACAAGAACAATGTGATGAACGGTGATCCTCCTGTAGAGTCACCAACTTCAGTTCTAGAAGAAGAGGAAGTGGAAGTGAAATCGGAGGAAGAGGTGGTTGCAGATGATGGATCTTCTTCTCTTGTGTTGAAATCAATGGTGGAGGAAGAAGAGAAGTTGCTTAAAGCTAGTGCTAAGGAAGAAGAGGAACTGTGTGAGGAGGCGCCGAATCTTAATGATACACAGTTTAATAAGCTGGATGAACTTTTAACTCAAACTAAACTCTACTCAGAGTTTCTTTTGGAGAAAATGGATGATATCACATTGAATCCGGGTGAACAAGAGAATCAGGACGAGGAAGAGAGTCAGCCGAGTGTGAAAAAGAAGGGCCGTGGGGCAAAACGAAAGGCGGCTACCCAATGCAATACTAGGAAAGCCAAAAAGGCGGTTGAAGCCATGATTACAAGATCTAAAGAAAATGTGAAGACTGAAGATGTGAATTTGACTGAAGAGGAAAGAACTGAGAAAGAGCAGAAGGAGCTGATGCCTTTGCTTACTGGTGGAAAATTGAAGTCTTATCAACTGAAGGGTGTAAAGTGGTTGATTTCCTTGTGGCAAAATGGATTGAATGGGATTCTAGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACGATTGGCTTTATTTCTCATCTAAAGTCAAAAGGACTGGATGGGCCATATATGATAATTGCTCCTCTATCAACCCTCTCCAATTGGGTGAATGAGATAACTAGGTTTACACCATCGCTCCCTGTTGTTATCTACCATGGTGACAAAAAACTGAGAGATCAAATCAGAAGGAAACATATGCCTAGAACTGTTGGCCCAAAATTTCCCATTGTAATAACTTCCTATGAGATTGCGATGAATGATGCTAGGAAATGTTTCGGGTCATACAGTTGGAAATATCTTGTTGTGGACGAGGGACACAGGCTCAAAAATTCAAACTGCAAATTAGTGAACATGTTGAGATACATTAAGGTTGAAAACAAGCTTCTTTTGACTGGCACACCTCTCCAGAATAATTTGGCAGAACTTTGGTCATTGCTGAACTTCATCTTACCTGATATATTCTCATCTCTTGAAGAATTTGAGAAATGGTTTAATCTGTCAGGAAAGTGCACTAATGGAGCAACAATGGAAGAAATGGAAGAGAAAAGAAGAAATCAAGTAGTGGCCAAGCTTCATGGAATTCTTAGGCCATTTCTTTTGCGTAGGATGAAGTCTGATGTTGAGCTAATGTTGCCACGGAAAAAAGAGATCATTATTTATGCTAACATGACTGAGCATCAGAAGAGTTTGCAGGATCATTTAATTAACGAGACACTGGGGAAATATTTGGACGCGAAACTATCAGTTGGACGTGCTGCAACGAAGCTTAATAATTTGGTTATTCAGCTTAGGAAAGTCTGTAACCATCCCGATCTCTTAGAATCAGCCTTTGATGGTTCATATTTGTATCCTCCGGTGAATGAGATAATCGAACAATGTGGAAAGTTTCACTTGCTCGATAGATTGTTGCAGCGGCTATTTGCACGTAATCACAAGGTTCTGATCTTCAGTCAGTGGACTAAAGTGCTAGATATAATGGATTACTATTTTAGTGAAAAGGGTTTTGAAGTTTGCAGGATTGATGGTTCGGTGAAATTGGATGATAGGAAACGTCAGATCGAGAACTTCAACGATACAAACAGCAATTGCAAAATCTTTCTCCTTTCTACTAGGGCTGGCGGGTTGGGAATAAACCTCACTGCAGCTGACACTTGCATTCTTTATGACAGTGACTGGAATCCTCAAATGGATTTACAGGCCATGGATAGATGTCATAGAATCGGTCAAACAAAGCCTGTTCATGTTTACAGGCTCGCAACTGCACAATCAGTAGAGGGTCGGATGTTGAAAAGAGCTTTCAGCAAGTTGAAACTTGAGCATGTGGTGATAGAGAAAGGACAGTTTCATCAAGAGCGTGTAGCGCCTTCCATTGTGGATGAAATGGAGGGAGAGGATATTTTGGCATTGCTTCGAGATGAAGAAACAGCAGAGGACAAAATGATACAGAAAGATATCAGCGATGAAGACCTGGAGAAGCTCTTGGATCGCAGCGATCTTGTTATCAACAGCTCAACTGATGATAAAGCTCCAGTAAGTACCTTTCCCGTTAAAGGGCCTGGATGGGAGGTGGTGATTCCAACTGCGTCTGGCGGCATGCTTTCTACTCTTAACAGCTAA 2256 0.4136 MDDKNNVMNGDPPVESPTSVLEEEEVEVKSEEEVVADDGSSSLVLKSMVEEEEKLLKASAKEEEELCEEAPNLNDTQFNKLDELLTQTKLYSEFLLEKMDDITLNPGEQENQDEEESQPSVKKKGRGAKRKAATQCNTRKAKKAVEAMITRSKENVKTEDVNLTEEERTEKEQKELMPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFISHLKSKGLDGPYMIIAPLSTLSNWVNEITRFTPSLPVVIYHGDKKLRDQIRRKHMPRTVGPKFPIVITSYEIAMNDARKCFGSYSWKYLVVDEGHRLKNSNCKLVNMLRYIKVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSLEEFEKWFNLSGKCTNGATMEEMEEKRRNQVVAKLHGILRPFLLRRMKSDVELMLPRKKEIIIYANMTEHQKSLQDHLINETLGKYLDAKLSVGRAATKLNNLVIQLRKVCNHPDLLESAFDGSYLYPPVNEIIEQCGKFHLLDRLLQRLFARNHKVLIFSQWTKVLDIMDYYFSEKGFEVCRIDGSVKLDDRKRQIENFNDTNSNCKIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRMLKRAFSKLKLEHVVIEKGQFHQERVAPSIVDEMEGEDILALLRDEETAEDKMIQKDISDEDLEKLLDRSDLVINSSTDDKAPVSTFPVKGPGWEVVIPTASGGMLSTLNS 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01029 751 CDD SF2_C_SNF 497 631 - -
Trre9g01029 751 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 197 365 IPR014001 -
Trre9g01029 751 FunFam Chromatin complex subunit A 106 425 652 - -
Trre9g01029 751 Pfam Helicase conserved C-terminal domain 511 621 IPR001650 -
Trre9g01029 751 MobiDBLite consensus disorder prediction 18 32 - -
Trre9g01029 751 MobiDBLite consensus disorder prediction 1 41 - -
Trre9g01029 751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 415 IPR027417 -
Trre9g01029 751 Gene3D - 186 416 IPR038718 -
Trre9g01029 751 MobiDBLite consensus disorder prediction 105 137 - -
Trre9g01029 751 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 511 667 IPR001650 -
Trre9g01029 751 Coils Coil 45 69 - -
Trre9g01029 751 PANTHER SNF2/RAD54 HELICASE FAMILY 42 696 - -
Trre9g01029 751 SMART ultradead3 181 373 IPR014001 -
Trre9g01029 751 Pfam SNF2-related domain 188 485 IPR000330 GO:0005524|GO:0140658
Trre9g01029 751 FunFam ATP-dependent DNA helicase DDM1 179 424 - -
Trre9g01029 751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 417 707 IPR027417 -
Trre9g01029 751 SMART helicmild6 537 621 IPR001650 -
Trre9g01029 751 Gene3D - 421 722 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01029 Trre-Chr9 8154175 8159635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01029 171 642 RAD5 or RAD16-like Gene Family AT3G16600 24.567 5.25e-32 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre9g01029 SNF2_N 7.5e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01029 K19001 - gmx:100817842 1182.55