Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01016 ATGTCTTCCCCTAATGATTCCTCACCGGATAATGCCACACCTGACAATAGTACCCCTGATGACGCCGATAACTCTGATTCACCACCATCACAACCACCGCCTTCAGAATCACCACCACAATCTCCACCTGCAGAGTCACCACCACAATCACCACCACCATCGCCACCTTCAGATCCCCCGCCATCTCCTTCACAATCACAACCTTCTCCTTCACCACCTACATCAAACAATCCATCCCCAGTCCCACCATCACCCAATGGAGCGGGTCGTTCTCCACCGGCCTCCTCTGGGTCCGGAAATTCACCATCACCTCCACACAAATCATTACCAAAGACATCAACCGAAAACTCGGACGGTAATTACGGAAACTCCAACAACAACAACAATGATAATACCAATAAGGCAATAATTGGAGCAGTGCTTGGGGTGGGGGCTGTTCTTCTCATTTTGGTTGTCGTCTGCCTTGTTTGCTCTAGGAAGAAGAAAAGAAAGCAAATGTACTATTATGGAGATCACCCATCTCATGCACAAGGGAATAATAATAATAATAGCTATTACAACAGTGGGCCGCATCCAAATTACTACGGAGGTCCACATGGGGATCATGTTGTTAGGCTACAAAATGGAATGGGTCCTAGTGGAATGGGTCCCAGTGGAATGGGTCCCAGTGGAATGGGTCCTAATGGTGGTGGTGGTTGGGGTGCACCACCACCTCCTCCTAACCTAATGAACAGTGCAGACATGAGCTCGAATTACTCAACCGGACCACCACCTTTGCCTCCTCCTTCACCAAGCCTTGCTTTAGGGCTTAAAGGAGGAACATTCACTTATGAGGAATTGGCAGCTGCAACCAATGGATTCATTGATTCAAATTTGATAGGACAAGGTGGTTTTGGTTATGTCCATAAGGGTGTATTACCTAGTGGAAAGGAAATAGCTGTCAAGAGTTTAAAATCGGGTAGCGGACAAGGAGAACGAGAGTTCCAAGCTGAGATTGACATCATCAGTCGAGTTCATCATCGTCATCTTGTTTCACTTGTTGGATACTGTATATCTGGTGGCCAAAGAATGTTGGTCTATGAATTTATTCCAAATAACACTATGGAATATCATCTTCATGGAAAGGGTCGACCTACTATGGATTGGCCAACTAGAATGAGGATTGCAATAGGTTCTGCTAAAGGGCTTGCTTATCTTCATGAGGATTGTCATCCTCGCATCATCCATCGTGATATCAAAGCTGCAAATGTCCTTATTGATGACAGCTTTGAAGCAAAGGTTGCTGATTTTGGATTGGCTAAGTTGACAACTGATAATAATACTCACGTATCAACTCGTGTCATGGGAACATTCGGGTACCTAGCCCCTGAATATGCATCAAGTGGAAAATTGACAGAGAAGTCTGATGTTTTCTCATTTGGGGTCATGCTATTGGAACTTGTAACGGGGAAGCGACCTGTGGATGCCTCAATTACCATGGATGACAGCTTAGTTGACTGGGCTCGACCCCTATTGACTCGTGGACTAGAGGAGGATGGAAACTTTGGTGAGTTGGTGGATCCATTTTTGGAAGGTAACTACAATCCTCAAGAACTCGCTAGAATGGCAGCTTGTGCTGCTGCTAGTATTCGTCACTCTGCCAAGAAGCGTCCTAAAATGAGCCAGATTGTAAGAACATTGGAAGGAGATGTTTCATTGGATGACTTGAAGGAGGGAATGAAACCAGGGCACAACCCTGTTCACACCTCTTCATCAGGTAGCTCAGAGTACGACACAATGCAGTACAACGCTGATATGCAGAAGTTCAGAAAGGCGGTGTTTAATAACAACAGCAATGAATTTGGCACCAGCAGTTTCTCCAGTGGCGATATGAACCAAACACCAAAGGCGAGACCGCCACAACCATTGCTTTAA 1914 0.4572 MSSPNDSSPDNATPDNSTPDDADNSDSPPSQPPPSESPPQSPPAESPPQSPPPSPPSDPPPSPSQSQPSPSPPTSNNPSPVPPSPNGAGRSPPASSGSGNSPSPPHKSLPKTSTENSDGNYGNSNNNNNDNTNKAIIGAVLGVGAVLLILVVVCLVCSRKKKRKQMYYYGDHPSHAQGNNNNNSYYNSGPHPNYYGGPHGDHVVRLQNGMGPSGMGPSGMGPSGMGPNGGGGWGAPPPPPNLMNSADMSSNYSTGPPPLPPPSPSLALGLKGGTFTYEELAAATNGFIDSNLIGQGGFGYVHKGVLPSGKEIAVKSLKSGSGQGEREFQAEIDIISRVHHRHLVSLVGYCISGGQRMLVYEFIPNNTMEYHLHGKGRPTMDWPTRMRIAIGSAKGLAYLHEDCHPRIIHRDIKAANVLIDDSFEAKVADFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELVTGKRPVDASITMDDSLVDWARPLLTRGLEEDGNFGELVDPFLEGNYNPQELARMAACAAASIRHSAKKRPKMSQIVRTLEGDVSLDDLKEGMKPGHNPVHTSSSGSSEYDTMQYNADMQKFRKAVFNNNSNEFGTSSFSSGDMNQTPKARPPQPLL 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01016 637 MobiDBLite consensus disorder prediction 570 590 - -
Trre9g01016 637 MobiDBLite consensus disorder prediction 613 637 - -
Trre9g01016 637 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 142 605 IPR047117 -
Trre9g01016 637 MobiDBLite consensus disorder prediction 1 128 - -
Trre9g01016 637 SUPERFAMILY Protein kinase-like (PK-like) 264 560 IPR011009 -
Trre9g01016 637 MobiDBLite consensus disorder prediction 172 266 - -
Trre9g01016 637 Gene3D Phosphorylase Kinase; domain 1 267 362 - -
Trre9g01016 637 MobiDBLite consensus disorder prediction 26 89 - -
Trre9g01016 637 FunFam proline-rich receptor-like protein kinase PERK1 265 362 - -
Trre9g01016 637 Gene3D Transferase(Phosphotransferase) domain 1 363 572 - -
Trre9g01016 637 ProSiteProfiles Protein kinase domain profile. 287 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g01016 637 MobiDBLite consensus disorder prediction 90 128 - -
Trre9g01016 637 Pfam Protein tyrosine and serine/threonine kinase 292 495 IPR001245 GO:0004672|GO:0006468
Trre9g01016 637 FunFam Proline-rich receptor-like protein kinase PERK1 363 571 - -
Trre9g01016 637 MobiDBLite consensus disorder prediction 613 628 - -
Trre9g01016 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 407 419 IPR008271 GO:0004672|GO:0006468
Trre9g01016 637 MobiDBLite consensus disorder prediction 174 190 - -
Trre9g01016 637 SMART serkin_6 287 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g01016 637 MobiDBLite consensus disorder prediction 1 25 - -
Trre9g01016 637 ProSitePatterns Protein kinases ATP-binding region signature. 293 315 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01016 Trre-Chr9 8011881 8014735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01016 46 607 Trihelix Transcription Factor Family AT1G70460 45.899 3.37e-152 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Trre9g01016 PK_Tyr_Ser-Thr 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01016 - - gmx:100777163 756.903