Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01003 ATGACACAAGAATATCCACACTCACTACCAATCTCAGACACAACGCTCCTTTTTGAACTCTCTCTTGCTTGTTCCTCACAAGATATTGAAAACAGGACAAGTGTTGATATTGATGATGGTTTTGTCTTTGATATTGATCCTAGTTTGCTTATGGACAATGACAAACTAGTCATTGATGACTTGATCGGAGAAGGGGCATTCTCAAGTGTATACAAAGGATGGTATGAAGATCGTCCTGTTGCTGTTAAGGTTTTAATCCCAGAAAGAACAAAGGAAGCTACACCCGAATGTAAGGAAAAATTTCAGAGGGAGGTTAACCTATTATCTAAGATTGAACATAACAATGTTATCAAGTTTATTGGAGCTTCTGTGGAACCATCAATGATGTTAATCATGGAACTTATGGAAGGAGGTTCCCTTCAGAAAAATTTGAAGAGCATTTATCCAATAACTTTACGTTTGGAACAATGTTTAAGTTATGCTCTTGATATTTCACAAGCTATGGAATATTTGCATGCAAATGGCATCATTCATAGGGACCTCAAGCCTGGTAATTTACTGCTTACAAAAGACCATAATCATGTTAAACTTGCTGATTTTGGGGTTGCTAGAGATAATATATGTGATCAGATGACTTGTGAAGCTGGTACTTATCGATATATGGCTCCTGAGCTATTGAACAAAGATCCACTTCCAAAAGGAGCAAAGAAAAGCTATGATCACAAGGCAGATGTGTACAGTTTTGCACTAACTCTTTGGTCTTTGATCAAAAATCAAACTCCTTTTAAAGATAGGAAGGACTTCATGGCTGCTTATGCTACTATAAATAATATAAGGCCGAGTTTGGATGAACTTCCTGAAGATATAGTTCCTTTGCTGCAATCCTGTTGGGTGGAAGATCCAAAACTCAGACCTGAATTTAAGGAAATCACTAAAACATTGATAAGGATTCTCCATAATATTTACACAACAAAGATTACTGCTCTTGCTAGCATTAAAGAGAATGCCGAAGGAAATAGCGAAAGTGAGGCAGAGACCTCAAGGGAAAATGAAAACATTCTCAATCGAGATATTGAGACTATGGAATCTGATGGCGAAGCAGACATTGCTCAATATTTCAGGATGGATGAAAAGAAACCTAAGAAGAAAAGCAAAATCAAACGCTTTTTTTCATATTTTCGCAGTTGTATTGCTTTTTAG 1200 0.3667 MTQEYPHSLPISDTTLLFELSLACSSQDIENRTSVDIDDGFVFDIDPSLLMDNDKLVIDDLIGEGAFSSVYKGWYEDRPVAVKVLIPERTKEATPECKEKFQREVNLLSKIEHNNVIKFIGASVEPSMMLIMELMEGGSLQKNLKSIYPITLRLEQCLSYALDISQAMEYLHANGIIHRDLKPGNLLLTKDHNHVKLADFGVARDNICDQMTCEAGTYRYMAPELLNKDPLPKGAKKSYDHKADVYSFALTLWSLIKNQTPFKDRKDFMAAYATINNIRPSLDELPEDIVPLLQSCWVEDPKLRPEFKEITKTLIRILHNIYTTKITALASIKENAEGNSESEAETSRENENILNRDIETMESDGEADIAQYFRMDEKKPKKKSKIKRFFSYFRSCIAF 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01003 399 SMART serkin_6 56 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g01003 399 PRINTS Tyrosine kinase catalytic domain signature 285 307 IPR001245 GO:0004672|GO:0006468
Trre9g01003 399 PRINTS Tyrosine kinase catalytic domain signature 170 188 IPR001245 GO:0004672|GO:0006468
Trre9g01003 399 PRINTS Tyrosine kinase catalytic domain signature 243 265 IPR001245 GO:0004672|GO:0006468
Trre9g01003 399 PRINTS Tyrosine kinase catalytic domain signature 132 145 IPR001245 GO:0004672|GO:0006468
Trre9g01003 399 Gene3D Transferase(Phosphotransferase) domain 1 46 355 - -
Trre9g01003 399 CDD STKc_MAP3K-like 62 314 - -
Trre9g01003 399 Pfam Protein kinase domain 59 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g01003 399 SUPERFAMILY Protein kinase-like (PK-like) 49 332 IPR011009 -
Trre9g01003 399 ProSiteProfiles Protein kinase domain profile. 56 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g01003 399 ProSitePatterns Protein kinases ATP-binding region signature. 62 83 IPR017441 GO:0005524
Trre9g01003 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 176 188 IPR008271 GO:0004672|GO:0006468
Trre9g01003 399 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 52 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01003 Trre-Chr9 7887572 7891679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01003 38 347 MAP Kinase Kinase Kinase AT5G66710 51.768 2.23e-109 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Trre9g01003 PK_Tyr_Ser-Thr 7.8e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01003 - K04427 gsj:114390113 407.142