Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01002 ATGAACCATCAAGATCAAATGATGCTCATGTCTCAACTATTCCCCTCTAGTGCTTACACTGAAGTAATTCCTCAACAAGGAGATCAGAAGAAGCCGCGAAGAAGGCGTACTAAGAAGATCAAAGGAGATAGTGTTAATGAAATGAATAAAAAGAGGAAATTGACTGATGAACAAGTTAATTTGCTTGAACAAAACTTTACAAATGAACATAAACTTGAATCAGAAAGGAAAGATAAGCTTGCAATGGAGCTTGGTTTGGATCCAAGACAAGTAGCTGTTTGGTTCCAAAATCGAAGAGCTAGATGGAAGAACAGAAAACTTGAAGAAGAATACAATAATCTTAAGAAATTTCATGAATCCACTATGCTTGAAAAATGTCTCCTAGAAACTGAGGTATTGAAGTTAAGTGAACAACTTTGTGAGGCAGATAAGGAAATTAAGAGGCTTAGAGAGCCTATTGAAAATGTCACAAGCAATAGTTCAAGTACTTCATCAATGTCACAATCAATGGAAGTAGTGGACCCTCCATTTTTGGGTGAATTTGGAGTTGATTATGGATATGATGATGATGTGTTTTTTGTGCCTAATGAGACACATTACTTCAATGGCATGGAATGGGTTACTTTGTACATCTAA 636 0.3585 MNHQDQMMLMSQLFPSSAYTEVIPQQGDQKKPRRRRTKKIKGDSVNEMNKKRKLTDEQVNLLEQNFTNEHKLESERKDKLAMELGLDPRQVAVWFQNRRARWKNRKLEEEYNNLKKFHESTMLEKCLLETEVLKLSEQLCEADKEIKRLREPIENVTSNSSSTSSMSQSMEVVDPPFLGEFGVDYGYDDDVFFVPNETHYFNGMEWVTLYI 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01002 211 Coils Coil 97 117 - -
Trre9g01002 211 MobiDBLite consensus disorder prediction 22 46 - -
Trre9g01002 211 SUPERFAMILY Homeodomain-like 49 113 IPR009057 -
Trre9g01002 211 Coils Coil 45 65 - -
Trre9g01002 211 ProSitePatterns 'Homeobox' domain signature. 80 103 IPR017970 GO:0000981|GO:0006355
Trre9g01002 211 Gene3D - 41 115 - -
Trre9g01002 211 ProSiteProfiles 'Homeobox' domain profile. 45 105 IPR001356 GO:0003677
Trre9g01002 211 Pfam Homeodomain 50 104 IPR001356 GO:0003677
Trre9g01002 211 PRINTS Lambda-repressor HTH signature 85 101 IPR000047 GO:0003677
Trre9g01002 211 PRINTS Lambda-repressor HTH signature 76 85 IPR000047 GO:0003677
Trre9g01002 211 CDD homeodomain 50 106 IPR001356 GO:0003677
Trre9g01002 211 FunFam homeobox-leucine zipper protein ATHB-40 44 113 - -
Trre9g01002 211 SMART HOX_1 48 109 IPR001356 GO:0003677
Trre9g01002 211 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 21 164 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01002 Trre-Chr9 7871182 7873627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01002 7 211 Homeobox Transcription Factor Family AT4G36740 54.245 2.48e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre9g01002 Homeodomain 2.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01002 K09338 - gmx:100809616 288.885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01002 9 7871182 7873627 Trre9g01002 9 7871182 7873627 ECH