Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00978 ATGGGCATGAAAATGAATATGATTGATAGTTGTTGGAGGCCAAATCCTGAATGGAGGAGGCATAGAGAACAACTAGCGACTTGCTCCATAGGTTATGCTGGAAAGATGACAAACAACATCGGTAACGACCTCATACATTATAAAGTTACTGACCCAAATGACGATCCCACAAATCCTAAACCCGGTACGTTGAGATACGGAGCTTCTGTAATTCAAGGCAAAGTGTGGATCACATTCCAAAAAAACATGAATATTAGACTCATGAAACCCCTTCTCGTTAGCAGTTTCACTACCATTGATGGTCGTGGCGTCAATGTCCATATTGCTAATAATGCATTGTTGGAACAAAGTTCACATTGGTGTGTGAATTGA 372 0.4059 MGMKMNMIDSCWRPNPEWRRHREQLATCSIGYAGKMTNNIGNDLIHYKVTDPNDDPTNPKPGTLRYGASVIQGKVWITFQKNMNIRLMKPLLVSSFTTIDGRGVNVHIANNALLEQSSHWCVN 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00978 123 PANTHER PECTATE LYASE 18-RELATED 3 114 IPR045032 GO:0030570
Trre9g00978 123 SUPERFAMILY Pectin lyase-like 5 113 IPR011050 -
Trre9g00978 123 Gene3D - 5 121 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00978 Trre-Chr9 7578193 7578564 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00978 36 114 Polysaccharide Lyase AT5G09280 65.823 7.22e-34 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00978 K01728 - gmx:100780437 192.2