Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00977 ATGATATTCAAGGCCACCAACATAATAATTCATAGCATTAGAATTCATCACTGCAAAGCTCAAGCGTCGGGGATGGTGATGGGGCCTAATGGAAAGGTAATTCATATTGGTCCTGTAGATGGAGATGCAATTAGATTGGTCACAGCTTCAAAAATTTGGATCGATCATAATACACTTTATGAATGTGAAGATGGTCTTCTTGATGTCACAAGAGGTTCTACTAGTGTCACTATATCCAATAACTGGTTTAGAGAACAAGATAAAGTTATGCTTCTTGGTCATGATGACGGGTATGTGAGAGACAAAAACATGAAGGTTACTGTTGTGTACAATCATTTTGGACCAAACTGCAACCAACGGATGCCTAGGATTCGCCATGGATATGCACATGTAGCCAACAATCTTTACTTTGGGTGGATGCAATATGCCATCGGTGGAAGTATGGGGCCTAGTCTCAAAAGTGAGGCTAACCTCTTCATAGCACCAAAAGTTGGAAGTAAAGAGGTAACATGGAGAAAAATTGGTAACACAAGTGGGGATAAATGGGAATTTCATTCTGTAAGGGATGCATTTCAAAATGGAGCCTCTTTTGCGGTAACAAAAGGAGGACGTGTGCCAAAGCCGAATTATATAAAAGAGCAGAGTTTTAAAGTTGTTGATGTCAAATCTATTAGATCATTAACAAGACCAGCTGGTGCATTTCAATGTAGTAGAACATCTATATGTTGA 729 0.3923 MIFKATNIIIHSIRIHHCKAQASGMVMGPNGKVIHIGPVDGDAIRLVTASKIWIDHNTLYECEDGLLDVTRGSTSVTISNNWFREQDKVMLLGHDDGYVRDKNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYFGWMQYAIGGSMGPSLKSEANLFIAPKVGSKEVTWRKIGNTSGDKWEFHSVRDAFQNGASFAVTKGGRVPKPNYIKEQSFKVVDVKSIRSLTRPAGAFQCSRTSIC 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00977 242 Pfam Pectate lyase 4 159 IPR002022 -
Trre9g00977 242 SUPERFAMILY Pectin lyase-like 2 210 IPR011050 -
Trre9g00977 242 Gene3D - 1 235 IPR012334 -
Trre9g00977 242 PRINTS Pollen allergen Amb family signature 142 161 IPR018082 -
Trre9g00977 242 PRINTS Pollen allergen Amb family signature 40 61 IPR018082 -
Trre9g00977 242 PRINTS Pollen allergen Amb family signature 213 236 IPR018082 -
Trre9g00977 242 PRINTS Pollen allergen Amb family signature 182 206 IPR018082 -
Trre9g00977 242 PRINTS Pollen allergen Amb family signature 120 139 IPR018082 -
Trre9g00977 242 PANTHER PECTATE LYASE 18-RELATED 1 238 IPR045032 GO:0030570
Trre9g00977 242 SMART amb_all 1 165 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00977 Trre-Chr9 7571043 7572266 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00977 1 169 Polysaccharide Lyase AT5G09280 73.964 1.28e-97 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00977 K01728 - gmx:100780437 433.721