Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00975 ATGGTATCTAAAGGTACGGCCAATTCTGTCCTTTGGAGTTTTGTTTTGGCCATTCTGATTGCCATAGTTTTCACTCCAAAATTTAGTTTTGCCAAACAATCCAAGTTAATGGGCATGAAAATGAACATGATTGATCGATGTTGGAGACCAAATCCTGAATGGAGGAAGCATAGACAACAACTAGCAACTTGCTCTGTGGGCTATGTTGGAAAGATGACAAACAACATTGGTAAGGGGCTCTTCCATTATAAAGTTACCGACCCAAATGACGATCCCACAAATCCTAAACCTGGTACGTTGAGATACGGAGCTTCAGTAATTCAAGGTAAAGTGTGGATCACATTCCAAAAAGACATGAACATCAAGCTCATGAAACCACTTCTCATTAGTAGTTTCACTACCATCGATGGTCGTGGCGTTAATGTGCACATTGCTGATAATGCATGCTTAATGATATTCAAGGCCACCGACATAATCATTCATAGCCTTCGAATTCATCACTGTAAAGCTCAAGCACCGGGGATGGTGATGGGGCCTAATGGAAAGGTAATTCATATTGGTCCTGTAGATGGAGATGCAATTAGATTGGTCACAGCTTCAAAAATCTGGATTGATCATAATACACTTTATGAATGTGAAGATGGTCTTCTTGATGTCACAAGAGGTTCTACAAATGTCACTGTATCCAATAATTGGTTTAGAGAACAAGATAAAGTTATGCTTCTAGGTCATGATGATGGGTATGTAAGGGACATGAACATGAAGGTTACTGTTGTGTACAATCATTTTGGACCTAACTGCAATCAACGAATGCCAAGAATTCGGCATGGATATGCACATGTAGCCAACAATCTTTACTTAGGGTGGATGCAATACGCCATCGGTGGAAGCATGGGGCCTAGCCTTAAAAGTGAATCTAACCTCTTCATAGCTCCGAAAGTTGGAAGTAAAGAGGTAACATGGAGAAAAAGTGGTGGTACAAATGGAGATAGATGGGAATTTCATTCGGTTAGGGATGCATTTGAAAATGGAGCCTCTTTCGCGGTAACAAAAGGAGCACGTGTGCCAAAGCCGAATTATAGCAAAGAACAAAAGTTTAACGTTGTTGATGTCAAATCTGTTAGATCATTGACAAGATCATCTGGTGCATTTAAATGTAGTAGAACCTCTATATGTTGA 1179 0.4003 MVSKGTANSVLWSFVLAILIAIVFTPKFSFAKQSKLMGMKMNMIDRCWRPNPEWRKHRQQLATCSVGYVGKMTNNIGKGLFHYKVTDPNDDPTNPKPGTLRYGASVIQGKVWITFQKDMNIKLMKPLLISSFTTIDGRGVNVHIADNACLMIFKATDIIIHSLRIHHCKAQAPGMVMGPNGKVIHIGPVDGDAIRLVTASKIWIDHNTLYECEDGLLDVTRGSTNVTVSNNWFREQDKVMLLGHDDGYVRDMNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYLGWMQYAIGGSMGPSLKSESNLFIAPKVGSKEVTWRKSGGTNGDRWEFHSVRDAFENGASFAVTKGARVPKPNYSKEQKFNVVDVKSVRSLTRSSGAFKCSRTSIC 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00975 392 PANTHER PECTATE LYASE 18-RELATED 34 388 IPR045032 GO:0030570
Trre9g00975 392 SMART amb_all 118 315 IPR002022 -
Trre9g00975 392 Gene3D - 41 385 IPR012334 -
Trre9g00975 392 PRINTS Pollen allergen Amb family signature 126 142 IPR018082 -
Trre9g00975 392 PRINTS Pollen allergen Amb family signature 363 386 IPR018082 -
Trre9g00975 392 PRINTS Pollen allergen Amb family signature 270 289 IPR018082 -
Trre9g00975 392 PRINTS Pollen allergen Amb family signature 190 211 IPR018082 -
Trre9g00975 392 PRINTS Pollen allergen Amb family signature 332 356 IPR018082 -
Trre9g00975 392 PRINTS Pollen allergen Amb family signature 89 114 IPR018082 -
Trre9g00975 392 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Trre9g00975 392 Pfam Pectate lyase 128 309 IPR002022 -
Trre9g00975 392 SUPERFAMILY Pectin lyase-like 38 385 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00975 Trre-Chr9 7559991 7561595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00975 72 319 Polysaccharide Lyase AT5G09280 74.597 5.94e-145 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00975 K01728 - gmx:100780437 664.07