Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00958 ATGGGTTGGTTTACCAAGTTTCTCAATGGCTCTAATCATAGAATTTCAAGAGGACAGTACAATGGCAAACATGGTGATGATAGAGTCTGGGATAATCATCATAGTTCAGTGGATGATTTGACGGATGTCGAGAAAGAAGACATTGATCGTGCAATTGCACTGTCTCTATCAGAGGAGGATCTAAAAGGGAAAAAAGTTGTTGTTGAGGATGAGTCTCAGTCTGAAGAAGACGAACCACTTTGTAAAATTGACGAGGAAGATGAGAATGTTGGTAAAGTTCGACTAGATGAAGATGAGCTGTTGTTAGGTAAAATTCAGCAGGATGAAAATGAACGCCGTGCCAAAGATCAACTTGAGGAAGATGAGCAACTTGCAAAGGCAATTCAATTAAGTTTGAACCTCGGTTCTCCTCGACATGGCAATGATTCTTTATCTCAACCTTCTCCCCACGTCTTTCCACCTGGATTCAGAATCTGTGCTGGATGCAATGCTGATATTGGCCATGGTAGATTTTTAAGTTGCATGGGAGGTGTCTGGCATCCACAATGCTTCGTCTGTCATGCTTGCCATCTGCCAATCACTGATTATGAGTTTTCCATGTCTAGCAACCGTCCTTACCATAAATCCTGCTATAGGGAGAAGCATCATCCAAGATGCGATGTTTGCAAGAATTTTATTCCAGCTAATTCAGCTGGACTCATTGAGTATAGAGCTCATCCTTTCTGGATACAAAAATACTGCCCAACACATGAGCTCGACCGCACTCCTCGTTGTTGTAGCTGTGAAAGAATGGAGCCAAAGGATTCAAAATATCTTTTGCTTGATGATGGTCGAAAACTATGTCTCGAGTGTCTAGACTCGGCAATTATGGATAGTCATGAATGTCAACCTGTCTACCTTGAAATACTAGAATTTTATGAAGGTTTAAATATGAAATTAGAGCAGCAAGTTCCTATGCTTTTGGTTGAGAGACAAGCACTGAATGAGGCCATGGAGGGAGAAAAGAACGGTCATCACCATTTACCTGAAACTAGGGGACTCTGCTTGTCGGAAGAACAAACTGTCACAACCATTTTGAGAAGACCAAGCATAGGGGCGGGAAACCGTGTCACCGACATGATAACCGAGCCTTATAGACTGACACGTCGATGTGAAGTGACAGCCATTCTTGTTTTGTATGGCCTTCCTAGGTTGTTGACAGGATCAATCCTAGCTCATGAGATAATGCATGCATGGCTCAGGCTTAAAGGTTATCCCAACCTAAGTCCAGAAGTTGAAGAAGGAATATGCCAAGTCTTGGCTCATATGTGGTTAGAATCAGAGCTCTATTCTGGATCTGGGAATAATAACGCACCGTCTTCATCTTCATCATCGGCAACACCTCTGTCCTCTTCTGCATCATCGAAGAAGGGTAAACGGTCTGATTTTGAGAAGAAACTTGGCGAATTTTTCATACACCAGATTGAGTCAGATACCTCGCCGGCCTATGGAGATGGATTCAGATTGGGTAACCAGGCAGTACTTAAGTATGGGCTCAAAAGTACCCTTGATCATATTCATTTGACAGGAACTTTTCCATGTTGA 1584 0.4255 MGWFTKFLNGSNHRISRGQYNGKHGDDRVWDNHHSSVDDLTDVEKEDIDRAIALSLSEEDLKGKKVVVEDESQSEEDEPLCKIDEEDENVGKVRLDEDELLLGKIQQDENERRAKDQLEEDEQLAKAIQLSLNLGSPRHGNDSLSQPSPHVFPPGFRICAGCNADIGHGRFLSCMGGVWHPQCFVCHACHLPITDYEFSMSSNRPYHKSCYREKHHPRCDVCKNFIPANSAGLIEYRAHPFWIQKYCPTHELDRTPRCCSCERMEPKDSKYLLLDDGRKLCLECLDSAIMDSHECQPVYLEILEFYEGLNMKLEQQVPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTILRRPSIGAGNRVTDMITEPYRLTRRCEVTAILVLYGLPRLLTGSILAHEIMHAWLRLKGYPNLSPEVEEGICQVLAHMWLESELYSGSGNNNAPSSSSSSATPLSSSASSKKGKRSDFEKKLGEFFIHQIESDTSPAYGDGFRLGNQAVLKYGLKSTLDHIHLTGTFPC 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00958 527 SMART lim_4 158 210 IPR001781 -
Trre9g00958 527 Pfam LIM domain 159 214 IPR001781 -
Trre9g00958 527 SMART uim 43 62 IPR003903 -
Trre9g00958 527 SMART uim 119 138 IPR003903 -
Trre9g00958 527 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 186 240 - -
Trre9g00958 527 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 119 138 IPR003903 -
Trre9g00958 527 ProSiteProfiles LIM domain profile. 157 217 IPR001781 -
Trre9g00958 527 PANTHER PROTEIN DA1-RELATED 2 3 526 IPR045218 -
Trre9g00958 527 MobiDBLite consensus disorder prediction 448 469 - -
Trre9g00958 527 Pfam Protein DA1 308 521 IPR022087 -
Trre9g00958 527 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 151 184 - -
Trre9g00958 527 ProSitePatterns LIM zinc-binding domain signature. 159 193 IPR001781 -
Trre9g00958 527 Gene3D Cysteine Rich Protein 153 216 - -
Trre9g00958 527 FunFam Protein DA1-related 1 153 212 - -
Trre9g00958 527 CDD LIM_DA1 159 211 - -
Trre9g00958 527 MobiDBLite consensus disorder prediction 448 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00958 Trre-Chr9 7396622 7400900 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre9g00958 DA1-like 1e-104 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00958 - - gmx:100817969 862.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00958 9 7396622 7400900 Trre9g00958 9 7396622 7400900 ECH
Trre15g03999 15 50394538 50398065 Trre9g00958 9 7396622 7400900 ECH
Trre9g00958 9 7396622 7400900 Trre15g03999 15 50394538 50398065 PCT