Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00953 ATGGGAATAGCAACACTAGTACCATTTCCTTCTTCTTCTATTATTCACTTGAAGACATATCATAACCATAACCATAACCATAAACATAACCAAGAAACCTTGAAATATTGTTCAAATTCTATGTCCCAAGATTATCAGCAAACAATCTTCGGTTTCTCCTCGAATGGATTCGAGAGATCATCGCAAGAGCAACAACAACAGCAGATCCATAGGGACAAAGTAAGGATGCTACAAGGGTTTAATTCAGCACCATTAGTAGAAGGAGAAGAAGTGGAAGAAAGAGGGGGTGTATATGAAACAGGAGGTATGTTATCAGAGATGTTTAATTTTGCTGATCCTTCAACCACAGCTGAATTGTTAGAAACCGCGAATTTTCGTTCTTCTTCAAGGCAACAAGAACATCAACAACAACAAACAACATCAGAAAACAACAATTGGTATGGTAATAGTAGACAAGGGATGCAGCAGCAGCATCAGCAGCAGATGTCAAACATTAACGCATCTGCTGCTGATTCAGCTGCTGCTATGCATCTTTTTCTCATGAACCCTACTCAAACAACTTCATCATCTTCCCCTCCTCATCAAAATTCTTCAACTCTTCACATGTTACTACCTAACCCTCCCTCTAATAATCCCTTACAAGGTTTTCCAAATTCCGGTAATTTCGGACAATTCACATCATGGGGTAGTAGTAGTACTCAAGAAGGTCAAGGTCAAGGACAAGGTCAAGGTCTTTCATTATCACTATCTTCTTCATTGCAAGCTGCAAAAGCTGAGGAAGAATTGAGAATGGGAGGAGGAGAAAGTGGTAATTTTATGTATAATTATAATAATTTTCAAGGTGTAGGTGGAGGAGGAGGAGGAGGACCATCTTCATCATCATCATATGCTCCGTACAAATTAAATCATCAACAAGCATTGAATTTACAATTGCAAGGAGGAGGAGGAGGGACCAATATTGGAGGATATCAATTATTACAAAGTCATCAAGGATTTGGAAGTGTAGTAAATGTTTTAAGAAATTCAAAATATATGAAAGCAACTCAAGAATTGCTACAAGAATTTTGTAGTGTTGGGAAGGGTAATTTTATTAAGAAGAACAAGTTTAATTCAAACCCTAATAATAATTGTTCCTCCAATGCTGTTGGTGGTGATACCATTCCTTCATCTTCATCAAAAGATCATCCTCCTCTTCCTTTGTCAGCTGGTGATAGGATTGAGCATCAAAGAAGGAAGGTCAAACTTCTATCCATGCTTGATGAGGTGGATAGGAGATACAATCACTATTGTGAACAAATGCAAATGGTAGTGAACTCATTTGATCTAATGATGGGTTTTGGAGCCGCGGTTCCATACACCGCGCTAGCTCAGAAAGCAATGTCTCGACATTTCCGGTGTCTAAAAGATGCAATAACAGTACAACTAAAGCAAAGTTGTGAGATACTTGGAGAAAAAGAAGGTGCAGGAGGAGGTTTGACTAAAGGAGAGACCCCTAGGCTTAAGGTACTTGAACAAAGCTTAAGACAACAAAGAGCATTTCATCAGATGGGTATGATGGATCAAGAAGCTTGGAGACCTCAAAGAGGATTGCCTGAACGTTCTGTCAATGTTTTGAGAGCTTGGCTTTTTGAGCATTTTCTACACCCCTATCCAAGTGATGCAGATAAGCATCTATTGGCACGACAAACTGGGCTATCAAGAAATCAGGTATCAAATTGGTTCATAAATGCAAGGGTTAGGTTGTGGAAACCAATGGTGGAAGAGATGTACCAACAAGAACTTAATGAAGCAGAAGATAGAGAGGGAAACCAAAGTAATAGCAACAGTGGAAACCAAACACAAACACCACCAACATCATCAGCAACAGAACCACCAACACCGATAAGAAAAAGACCCGATATCAATCCTGAAAACGACACTTCATTAGTTCCAATCAATAGACAACAATCCTTCTCTGAAAATCAAGCAATGCAATCCACCACCGTCAACGCCGCCACCGTTTCTGAGGTGGTTCCACCCTTTGATTCTGACATGCCCCCACAACGATCGATAGCGATGGATGACGCGAATCGATATGGCAGCTTGGTTCCAGAAGATTATGAGACAGGCTCTATTAGTGCTGACATTGGATCATCAACTCTTATTAGATTCGGGCCCACTACTGGTGATGTGTCACTCACATTAGGGTTACGCCACACCGGAAATGTGTCTGATGAAACAAATTTCTCTATTAGAGACTTCGGAAGCATGTAG 2253 0.4017 MGIATLVPFPSSSIIHLKTYHNHNHNHKHNQETLKYCSNSMSQDYQQTIFGFSSNGFERSSQEQQQQQIHRDKVRMLQGFNSAPLVEGEEVEERGGVYETGGMLSEMFNFADPSTTAELLETANFRSSSRQQEHQQQQTTSENNNWYGNSRQGMQQQHQQQMSNINASAADSAAAMHLFLMNPTQTTSSSSPPHQNSSTLHMLLPNPPSNNPLQGFPNSGNFGQFTSWGSSSTQEGQGQGQGQGLSLSLSSSLQAAKAEEELRMGGGESGNFMYNYNNFQGVGGGGGGGPSSSSSYAPYKLNHQQALNLQLQGGGGGTNIGGYQLLQSHQGFGSVVNVLRNSKYMKATQELLQEFCSVGKGNFIKKNKFNSNPNNNCSSNAVGGDTIPSSSSKDHPPLPLSAGDRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDLMMGFGAAVPYTALAQKAMSRHFRCLKDAITVQLKQSCEILGEKEGAGGGLTKGETPRLKVLEQSLRQQRAFHQMGMMDQEAWRPQRGLPERSVNVLRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQELNEAEDREGNQSNSNSGNQTQTPPTSSATEPPTPIRKRPDINPENDTSLVPINRQQSFSENQAMQSTTVNAATVSEVVPPFDSDMPPQRSIAMDDANRYGSLVPEDYETGSISADIGSSTLIRFGPTTGDVSLTLGLRHTGNVSDETNFSIRDFGSM 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00953 750 MobiDBLite consensus disorder prediction 125 168 - -
Trre9g00953 750 MobiDBLite consensus disorder prediction 374 402 - -
Trre9g00953 750 Pfam Homeobox KN domain 541 580 IPR008422 GO:0003677|GO:0006355
Trre9g00953 750 ProSiteProfiles 'Homeobox' domain profile. 521 584 IPR001356 GO:0003677
Trre9g00953 750 SUPERFAMILY Homeodomain-like 526 591 IPR009057 -
Trre9g00953 750 MobiDBLite consensus disorder prediction 183 252 - -
Trre9g00953 750 MobiDBLite consensus disorder prediction 601 619 - -
Trre9g00953 750 Gene3D - 527 589 - -
Trre9g00953 750 SMART HOX_1 524 588 IPR001356 GO:0003677
Trre9g00953 750 MobiDBLite consensus disorder prediction 374 396 - -
Trre9g00953 750 FunFam BEL1-like homeodomain protein 4 527 589 - -
Trre9g00953 750 Pfam Associated with HOX 338 472 IPR006563 -
Trre9g00953 750 SMART prehox3 333 473 IPR006563 -
Trre9g00953 750 CDD homeodomain 524 585 IPR001356 GO:0003677
Trre9g00953 750 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 232 609 - -
Trre9g00953 750 MobiDBLite consensus disorder prediction 596 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00953 Trre-Chr9 7345398 7354600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00953 1 571 Homeobox Transcription Factor Family AT4G36870 48.499 5.02e-145 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Trre9g00953 POX 3.1e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00953 - - cam:101513121 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00953 9 7345398 7354600 Trre9g00953 9 7345398 7354600 ECH
Trre15g03991 15 50209745 50219376 Trre9g00953 9 7345398 7354600 ECH
Trre9g00953 9 7345398 7354600 Trre15g03991 15 50209745 50219376 PCT