Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00952 ATGGAAGTACTTCCTTGTTCTGGTGTTCAATATGCTGGTGAATCTGATTGCCCTCAACGCAATTCAGAAACAACTTTTGTCTATCAGGAAAAATTTAATTGCCCTGAAAATAGCGAACATGCTAAATTGGTAGATGGTCAACCTTGTGAATCATTGCATAATATGCAAGGGATAGAGATAGATAAGCAAGGTGAGGGGACACACAATGTTGGTGATTTGTTAATTAATTCGAATTGTCAAGTGGATGACCAAAAGGATTATGTCGGTTTTCATGATTTTGATGAAGATATGATAAATGAACGGTACTTAACCTCTGAAAATTCTCTCTCTGTTGTTGATACAATTGAGAGTGAATCACCAAACAATGGTAGGGAAGGAGACTTGTCGTTTTCTGAACCAAAGTGGTTAGAGGGGGACGAATCTGTCGCGTTGTGGGTCAAGTGGAGAGGGAAGTGGCTGGCTGGTATCCGATGTGCAAGGGCTGACTGGCCATTATCAACTTTGAGAGCCAAACCAACTCACGACCGAAAGAAATATTTTGTCATATTTTTTCCACACACAAAGATTTATTCTTGGGCCGATACGCTGCTTGTTAGGTCAATTGATGAGTATCCGCATCCTGTTGCACACAAGACTCATCAAGTAGGACTGAAATTGGTAAAAGACTTAACAGCTGCACGGCGGTTTATAATGCAAAAGCTAGTTGTTGGTATGCTGAACATCGTTGATCAGTTTCATCTGAATGCTTTGACAGAAACTGCTCGTGATGTGAAGGTCTGGAAGGAATTCGCCATGGAGGCTTCTCGTTGTAATGGTTATTCCGATTTTGGAAGATTGCTTCTAAAGATATACAATTGTATCCTGGGGCATTACATAAGTGTTGACTGGTTACAACAATCTTCTCCCTCTTGGGTTGAACGATGTCAGAGTGCAAATAGTGCCGAATCGGTAGAGCTGCTGAAGGAGGAATTGTTTGATTCTATTTTATGGAATGATGTCAACAATCTCGGGGACTCACCGGTGCAACCGATATTAGGTTCTGAATGGAGAACCTGGAAGCATGATGTAGCGAAATGGTTCTCGCCATCACCTCCCGTATCTAGCAGCAAAGACACTCCTACTAGGCAGATTTCTGACGATTCATACCTAACAAACCTTCAGGCTTCTAGAAAAAGGCCTAAGCTTGAAGTTCGTCGTGCAGATACACATGCTTCAAAAGTGGAATTCAAGGGTTCAGATCACACTATTGCTCTTGTGAATGACACTGGTTTCTTTAATAATCAAGACACACTGAGCACATTAACAGCTGAGACTCTTAAACATGAAAATAATAGGAAGGTATCTATCACAAATGATTTGTCCAGTAATTTGACCAATAAATGGAATGAAATTGTAGTTGAGGCTGCTGATTCTGATTTCTTGTATACCAAAGAAAATGAATTAACACCTATAAATGAAATGGCTATTGTAAAATCTGTGGACCCTGGTAGTAAGAATCGACAATGTATAGCTTTTATTGAAGCCAAGGGAAGACAATGCGTGAGATGGGCAAATGAGGGAGATGTTTACTGCTGTGTGCATTTATCCTCCCGTTTTTTGGCTGGCTCAGCAAATGCCGAAAATCCGGGCCAAACTGATACTCCTATGTGTGATGGTACAACTGTCGTGGGTACTAAATGCAAGCATCGGTCTCTACCTGGATCGTTATACTGTAAGAAACACAGGCCCTATGCTGAAACTGAACAGAACTCAAGTTTAGCCCAAAATACTATGAAGAGGAAGCATGAAGAAAATTATACTGGTTCAGAGAACATGATCTGCAAAGACATGGTATTGGTAAATGCTGAAACTGCACTGCAAGTGGTTCCGGTGCCATCCATTGCTGGTGATTCTTTACATGGAGAAATGATCTTATATGAAAAGCCAATGCATTCTGAAAAAGGTCATGTTGTAATGGAGGCTCCGATCTGTATAGGTTCTCCTCCATTTGATAATACGAATCCTTGTAGGGAAGTTCCTAAGCGCTATTCCTTGTACTGCGAGATCCACCTTCCAAGTTGGCTTAAACGAGCAAGAAATGGGAAGAGTAGAATAGTATCAAAAGAAGTGTTCTCAGAACTTTTGAGGGGCTGTAGCTCGTGGGAGCAAAAGGTACATCTGCATGAAGCGTGCGAGCTTTTTTACAGGCTATTCAAAAGCATTTTATCACTAAGAAACCAAGTTCCCAAGGATGTCCAATTCCAATGGGCTTTGACTGAAGCCTCTAAAGAAACTGGTGTTGGAGAATTTTTTACGAAGTTGGTTCAAAGTGAAAAAGAGAGAATCAAATCAATGTGGGGATTCAATGATGACATGGATGTACCCTCCGTAGTAGCAGAACAACAACCTCTCTTGCTCATGCCACTCCCGATTAATCATAGCTTTGATAATGAGAATACCATCAAGTGTAAGATATGCTCCACGCAATTTCCTGATGACCAAGCACTCGGTAACCATTGGATGGACAGTCATAAAAAGGAAGCACAATGGCTGTTTAGAGGCTATGCGTGCGCCATTTGTCTGGATTCTTTTACTAACAAGAAACTTCTGGAAACTCATGTTCAAGAGAGACATCATGTGCAGTTTGTCGAACAATGCATGCTTCTCCAATGCATTCCTTGTGGAAGTCATTTTGGACATAGTGAGCAATTATGGCAGCATGTTTTATCAGCTCATCAGGTTGATTTTAAGCCATCAAAATCTCCTGAGCAGCAAACTTTCTCTACTGGCGAAGGTTCGGCAGTAAAACATGACCAGGGAAATTCTACCTCTTCAAAAAATAATTCCGAGAATCCAGGTGGGTCACGGAGGTTAGTTTGCAGGTTTTGTGGGTTGAAATTTGATTTACTACCTGACCTAGGCAGACATCACCAAGCTGCTCATATGGGGCCCACCAATCTACTTAGCAACCGTCCTGCTAAGAGGGGAGTTCGTTATTATGCATATAAATTAAAATCTGGCAGACTAAGCCGCCCTAGATTTAAGAAAGGTTTGGCTGCAGCAGCATCATTGAGGATGAGAAATAAAGCTAATGCCAATTTAAAGCGATGCATTCAGGCAACAAAGTCAATTGGCGTGGAAGGAACAGCCGTACAACCTCATGTAACAGAAACAACAGATATCAGTGGATTGACAAAAAATCAATGCTCAGCTGTTGCCAAAATTTTGTTTTCCGAAATTCAGAAAACAAAACCTCGGCCTAATAATCTTGATATTTTATCTGTTGCTCGCTTTGCTTGCTGCAAAGTTAATCTTGTAGCCTCTCTGGAAGAGAAATTTGGAATTCTTCCTGAAAAGCTATATTTAAAGGCTGCAAAACTTTGCAGTGATAATAATGTTGTTGCGAAATGGCACCATGAGGGGTTTGTTTGTCCCAAAGGTTGTAACTCGTTGAAGGGTCAAGCGTTGCAGTCTCCTTTAGCATCTCTTCCTAATGGTTTTGGAATGCCAAAATCTTCAAATTTGTCTGATCTTGCAAGTGATGAGTGGGAGGTTGATGAGTTTCACTGCATAATCGACTCACAAAGTTTACAGTTAGGTTCACGGAAAAGGGCTGTAGTATTGTGTGATGACATTAGCTTTGGGAAGGAGTCAGTTCCTGTTATTTGTGTAGTAGACCAGGAACTTCTACATTCTCTAAATGCGGATGGGTCTAATGAACAAGATATAATCACTTCTAAACCTTGGGAGAGCTTCTCCTATGTTACGAAGCCAATAATTGATCAATCCCTTAGTCTTGATTCAGAGAGTCCGCAATTGGGATGCGCCTGCTCATATTCTACCTGCTGTCCTGAAACATGTGATCATGTATACCTTTTTGGTGATGACTATGTTGATGCAAAAGACATATTTGGGAAACCAATGCGTGGAAGATCCCCATATGATCAGAACGGTCGATTAATATTGGAGGAAGGTTACCTTGTCTATGAATGTAACGGTATGTGCAGATGCAATAAATCCTGTCCAAATAGAGTATTGCAGAATGGAGTACGAGTCAAATTGGAAGTCTTTAAAACTGAGAAAAAGGGATGGGCAGTAAGGGCTGGAGAAACTATTCTACGAGGAACATTTGTTTGCGAGTACATAGGAGAGGTTTTAGATGTGCAGGAGGCACACAACAGGCGCGAAAGCTATGACACAACGAATAGCAGTTATTTCTATGACATCAATGCTCGTGTTAATGATATGAGTAGATTGATTGAGGAACAAGTCCAATATGTGATTGATGCTACTAAAAATGGAAATGTGTCGAGGTTCATCAATCATAGTTGCTCGCCCAATCTTGTGAGTCACCAAGTTATCATAGAGAGCATGGATTGTGAGCGTTCACACATTGGTTTTTATGCAAGTCGGGATATTGCTTTGGGTGAAGAACTGACATATGGTTTTCAGTACGAGCTTGTGCCTGGCGAAGGATCTCCTTGTTTGTGTGAATCGTCAAAATGTAGGGGACGCCTTCACTAG 4503 0.4115 MEVLPCSGVQYAGESDCPQRNSETTFVYQEKFNCPENSEHAKLVDGQPCESLHNMQGIEIDKQGEGTHNVGDLLINSNCQVDDQKDYVGFHDFDEDMINERYLTSENSLSVVDTIESESPNNGREGDLSFSEPKWLEGDESVALWVKWRGKWLAGIRCARADWPLSTLRAKPTHDRKKYFVIFFPHTKIYSWADTLLVRSIDEYPHPVAHKTHQVGLKLVKDLTAARRFIMQKLVVGMLNIVDQFHLNALTETARDVKVWKEFAMEASRCNGYSDFGRLLLKIYNCILGHYISVDWLQQSSPSWVERCQSANSAESVELLKEELFDSILWNDVNNLGDSPVQPILGSEWRTWKHDVAKWFSPSPPVSSSKDTPTRQISDDSYLTNLQASRKRPKLEVRRADTHASKVEFKGSDHTIALVNDTGFFNNQDTLSTLTAETLKHENNRKVSITNDLSSNLTNKWNEIVVEAADSDFLYTKENELTPINEMAIVKSVDPGSKNRQCIAFIEAKGRQCVRWANEGDVYCCVHLSSRFLAGSANAENPGQTDTPMCDGTTVVGTKCKHRSLPGSLYCKKHRPYAETEQNSSLAQNTMKRKHEENYTGSENMICKDMVLVNAETALQVVPVPSIAGDSLHGEMILYEKPMHSEKGHVVMEAPICIGSPPFDNTNPCREVPKRYSLYCEIHLPSWLKRARNGKSRIVSKEVFSELLRGCSSWEQKVHLHEACELFYRLFKSILSLRNQVPKDVQFQWALTEASKETGVGEFFTKLVQSEKERIKSMWGFNDDMDVPSVVAEQQPLLLMPLPINHSFDNENTIKCKICSTQFPDDQALGNHWMDSHKKEAQWLFRGYACAICLDSFTNKKLLETHVQERHHVQFVEQCMLLQCIPCGSHFGHSEQLWQHVLSAHQVDFKPSKSPEQQTFSTGEGSAVKHDQGNSTSSKNNSENPGGSRRLVCRFCGLKFDLLPDLGRHHQAAHMGPTNLLSNRPAKRGVRYYAYKLKSGRLSRPRFKKGLAAAASLRMRNKANANLKRCIQATKSIGVEGTAVQPHVTETTDISGLTKNQCSAVAKILFSEIQKTKPRPNNLDILSVARFACCKVNLVASLEEKFGILPEKLYLKAAKLCSDNNVVAKWHHEGFVCPKGCNSLKGQALQSPLASLPNGFGMPKSSNLSDLASDEWEVDEFHCIIDSQSLQLGSRKRAVVLCDDISFGKESVPVICVVDQELLHSLNADGSNEQDIITSKPWESFSYVTKPIIDQSLSLDSESPQLGCACSYSTCCPETCDHVYLFGDDYVDAKDIFGKPMRGRSPYDQNGRLILEEGYLVYECNGMCRCNKSCPNRVLQNGVRVKLEVFKTEKKGWAVRAGETILRGTFVCEYIGEVLDVQEAHNRRESYDTTNSSYFYDINARVNDMSRLIEEQVQYVIDATKNGNVSRFINHSCSPNLVSHQVIIESMDCERSHIGFYASRDIALGEELTYGFQYELVPGEGSPCLCESSKCRGRLH 1500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00952 1500 ProSitePatterns Zinc finger C2H2 type domain signature. 816 837 IPR013087 -
Trre9g00952 1500 ProSitePatterns Zinc finger C2H2 type domain signature. 884 905 IPR013087 -
Trre9g00952 1500 ProSiteProfiles Post-SET domain profile. 1484 1500 IPR003616 -
Trre9g00952 1500 ProSiteProfiles Zinc finger C2H2 type domain profile. 951 979 IPR013087 -
Trre9g00952 1500 ProSitePatterns Zinc finger C2H2 type domain signature. 953 974 IPR013087 -
Trre9g00952 1500 SMART set_7 1345 1483 IPR001214 GO:0005515
Trre9g00952 1500 Pfam Zinc finger C2H2-type, 3 repeats 850 975 IPR040689 -
Trre9g00952 1500 MobiDBLite consensus disorder prediction 911 946 - -
Trre9g00952 1500 Pfam Pre-SET motif 1205 1337 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre9g00952 1500 Gene3D Classic Zinc Finger 808 880 - -
Trre9g00952 1500 ProSiteProfiles Pre-SET domain profile. 1266 1342 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre9g00952 1500 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1500 - -
Trre9g00952 1500 SUPERFAMILY SET domain 1196 1490 IPR046341 -
Trre9g00952 1500 ProSiteProfiles SET domain profile. 1345 1477 IPR001214 GO:0005515
Trre9g00952 1500 SMART preset_2 1202 1329 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre9g00952 1500 Gene3D SET domain 1183 1481 IPR046341 -
Trre9g00952 1500 SMART c2h2final6 951 974 IPR013087 -
Trre9g00952 1500 SMART c2h2final6 848 871 IPR013087 -
Trre9g00952 1500 SMART c2h2final6 814 837 IPR013087 -
Trre9g00952 1500 SMART c2h2final6 882 905 IPR013087 -
Trre9g00952 1500 Pfam SET domain 1356 1474 IPR001214 GO:0005515
Trre9g00952 1500 ProSiteProfiles Zinc finger C2H2 type domain profile. 848 871 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00952 Trre-Chr9 7334553 7341876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00952 100 1499 C2H2 Transcription Factor Family AT2G23740 50.989 0.0 1375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre9g00952 Pre-SET 3.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00952 - - gmx:100786757 2341.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00952 9 7334553 7341876 Trre9g00952 9 7334553 7341876 ECH