Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre9g00952 | ATGGAAGTACTTCCTTGTTCTGGTGTTCAATATGCTGGTGAATCTGATTGCCCTCAACGCAATTCAGAAACAACTTTTGTCTATCAGGAAAAATTTAATTGCCCTGAAAATAGCGAACATGCTAAATTGGTAGATGGTCAACCTTGTGAATCATTGCATAATATGCAAGGGATAGAGATAGATAAGCAAGGTGAGGGGACACACAATGTTGGTGATTTGTTAATTAATTCGAATTGTCAAGTGGATGACCAAAAGGATTATGTCGGTTTTCATGATTTTGATGAAGATATGATAAATGAACGGTACTTAACCTCTGAAAATTCTCTCTCTGTTGTTGATACAATTGAGAGTGAATCACCAAACAATGGTAGGGAAGGAGACTTGTCGTTTTCTGAACCAAAGTGGTTAGAGGGGGACGAATCTGTCGCGTTGTGGGTCAAGTGGAGAGGGAAGTGGCTGGCTGGTATCCGATGTGCAAGGGCTGACTGGCCATTATCAACTTTGAGAGCCAAACCAACTCACGACCGAAAGAAATATTTTGTCATATTTTTTCCACACACAAAGATTTATTCTTGGGCCGATACGCTGCTTGTTAGGTCAATTGATGAGTATCCGCATCCTGTTGCACACAAGACTCATCAAGTAGGACTGAAATTGGTAAAAGACTTAACAGCTGCACGGCGGTTTATAATGCAAAAGCTAGTTGTTGGTATGCTGAACATCGTTGATCAGTTTCATCTGAATGCTTTGACAGAAACTGCTCGTGATGTGAAGGTCTGGAAGGAATTCGCCATGGAGGCTTCTCGTTGTAATGGTTATTCCGATTTTGGAAGATTGCTTCTAAAGATATACAATTGTATCCTGGGGCATTACATAAGTGTTGACTGGTTACAACAATCTTCTCCCTCTTGGGTTGAACGATGTCAGAGTGCAAATAGTGCCGAATCGGTAGAGCTGCTGAAGGAGGAATTGTTTGATTCTATTTTATGGAATGATGTCAACAATCTCGGGGACTCACCGGTGCAACCGATATTAGGTTCTGAATGGAGAACCTGGAAGCATGATGTAGCGAAATGGTTCTCGCCATCACCTCCCGTATCTAGCAGCAAAGACACTCCTACTAGGCAGATTTCTGACGATTCATACCTAACAAACCTTCAGGCTTCTAGAAAAAGGCCTAAGCTTGAAGTTCGTCGTGCAGATACACATGCTTCAAAAGTGGAATTCAAGGGTTCAGATCACACTATTGCTCTTGTGAATGACACTGGTTTCTTTAATAATCAAGACACACTGAGCACATTAACAGCTGAGACTCTTAAACATGAAAATAATAGGAAGGTATCTATCACAAATGATTTGTCCAGTAATTTGACCAATAAATGGAATGAAATTGTAGTTGAGGCTGCTGATTCTGATTTCTTGTATACCAAAGAAAATGAATTAACACCTATAAATGAAATGGCTATTGTAAAATCTGTGGACCCTGGTAGTAAGAATCGACAATGTATAGCTTTTATTGAAGCCAAGGGAAGACAATGCGTGAGATGGGCAAATGAGGGAGATGTTTACTGCTGTGTGCATTTATCCTCCCGTTTTTTGGCTGGCTCAGCAAATGCCGAAAATCCGGGCCAAACTGATACTCCTATGTGTGATGGTACAACTGTCGTGGGTACTAAATGCAAGCATCGGTCTCTACCTGGATCGTTATACTGTAAGAAACACAGGCCCTATGCTGAAACTGAACAGAACTCAAGTTTAGCCCAAAATACTATGAAGAGGAAGCATGAAGAAAATTATACTGGTTCAGAGAACATGATCTGCAAAGACATGGTATTGGTAAATGCTGAAACTGCACTGCAAGTGGTTCCGGTGCCATCCATTGCTGGTGATTCTTTACATGGAGAAATGATCTTATATGAAAAGCCAATGCATTCTGAAAAAGGTCATGTTGTAATGGAGGCTCCGATCTGTATAGGTTCTCCTCCATTTGATAATACGAATCCTTGTAGGGAAGTTCCTAAGCGCTATTCCTTGTACTGCGAGATCCACCTTCCAAGTTGGCTTAAACGAGCAAGAAATGGGAAGAGTAGAATAGTATCAAAAGAAGTGTTCTCAGAACTTTTGAGGGGCTGTAGCTCGTGGGAGCAAAAGGTACATCTGCATGAAGCGTGCGAGCTTTTTTACAGGCTATTCAAAAGCATTTTATCACTAAGAAACCAAGTTCCCAAGGATGTCCAATTCCAATGGGCTTTGACTGAAGCCTCTAAAGAAACTGGTGTTGGAGAATTTTTTACGAAGTTGGTTCAAAGTGAAAAAGAGAGAATCAAATCAATGTGGGGATTCAATGATGACATGGATGTACCCTCCGTAGTAGCAGAACAACAACCTCTCTTGCTCATGCCACTCCCGATTAATCATAGCTTTGATAATGAGAATACCATCAAGTGTAAGATATGCTCCACGCAATTTCCTGATGACCAAGCACTCGGTAACCATTGGATGGACAGTCATAAAAAGGAAGCACAATGGCTGTTTAGAGGCTATGCGTGCGCCATTTGTCTGGATTCTTTTACTAACAAGAAACTTCTGGAAACTCATGTTCAAGAGAGACATCATGTGCAGTTTGTCGAACAATGCATGCTTCTCCAATGCATTCCTTGTGGAAGTCATTTTGGACATAGTGAGCAATTATGGCAGCATGTTTTATCAGCTCATCAGGTTGATTTTAAGCCATCAAAATCTCCTGAGCAGCAAACTTTCTCTACTGGCGAAGGTTCGGCAGTAAAACATGACCAGGGAAATTCTACCTCTTCAAAAAATAATTCCGAGAATCCAGGTGGGTCACGGAGGTTAGTTTGCAGGTTTTGTGGGTTGAAATTTGATTTACTACCTGACCTAGGCAGACATCACCAAGCTGCTCATATGGGGCCCACCAATCTACTTAGCAACCGTCCTGCTAAGAGGGGAGTTCGTTATTATGCATATAAATTAAAATCTGGCAGACTAAGCCGCCCTAGATTTAAGAAAGGTTTGGCTGCAGCAGCATCATTGAGGATGAGAAATAAAGCTAATGCCAATTTAAAGCGATGCATTCAGGCAACAAAGTCAATTGGCGTGGAAGGAACAGCCGTACAACCTCATGTAACAGAAACAACAGATATCAGTGGATTGACAAAAAATCAATGCTCAGCTGTTGCCAAAATTTTGTTTTCCGAAATTCAGAAAACAAAACCTCGGCCTAATAATCTTGATATTTTATCTGTTGCTCGCTTTGCTTGCTGCAAAGTTAATCTTGTAGCCTCTCTGGAAGAGAAATTTGGAATTCTTCCTGAAAAGCTATATTTAAAGGCTGCAAAACTTTGCAGTGATAATAATGTTGTTGCGAAATGGCACCATGAGGGGTTTGTTTGTCCCAAAGGTTGTAACTCGTTGAAGGGTCAAGCGTTGCAGTCTCCTTTAGCATCTCTTCCTAATGGTTTTGGAATGCCAAAATCTTCAAATTTGTCTGATCTTGCAAGTGATGAGTGGGAGGTTGATGAGTTTCACTGCATAATCGACTCACAAAGTTTACAGTTAGGTTCACGGAAAAGGGCTGTAGTATTGTGTGATGACATTAGCTTTGGGAAGGAGTCAGTTCCTGTTATTTGTGTAGTAGACCAGGAACTTCTACATTCTCTAAATGCGGATGGGTCTAATGAACAAGATATAATCACTTCTAAACCTTGGGAGAGCTTCTCCTATGTTACGAAGCCAATAATTGATCAATCCCTTAGTCTTGATTCAGAGAGTCCGCAATTGGGATGCGCCTGCTCATATTCTACCTGCTGTCCTGAAACATGTGATCATGTATACCTTTTTGGTGATGACTATGTTGATGCAAAAGACATATTTGGGAAACCAATGCGTGGAAGATCCCCATATGATCAGAACGGTCGATTAATATTGGAGGAAGGTTACCTTGTCTATGAATGTAACGGTATGTGCAGATGCAATAAATCCTGTCCAAATAGAGTATTGCAGAATGGAGTACGAGTCAAATTGGAAGTCTTTAAAACTGAGAAAAAGGGATGGGCAGTAAGGGCTGGAGAAACTATTCTACGAGGAACATTTGTTTGCGAGTACATAGGAGAGGTTTTAGATGTGCAGGAGGCACACAACAGGCGCGAAAGCTATGACACAACGAATAGCAGTTATTTCTATGACATCAATGCTCGTGTTAATGATATGAGTAGATTGATTGAGGAACAAGTCCAATATGTGATTGATGCTACTAAAAATGGAAATGTGTCGAGGTTCATCAATCATAGTTGCTCGCCCAATCTTGTGAGTCACCAAGTTATCATAGAGAGCATGGATTGTGAGCGTTCACACATTGGTTTTTATGCAAGTCGGGATATTGCTTTGGGTGAAGAACTGACATATGGTTTTCAGTACGAGCTTGTGCCTGGCGAAGGATCTCCTTGTTTGTGTGAATCGTCAAAATGTAGGGGACGCCTTCACTAG | 4503 | 0.4115 | MEVLPCSGVQYAGESDCPQRNSETTFVYQEKFNCPENSEHAKLVDGQPCESLHNMQGIEIDKQGEGTHNVGDLLINSNCQVDDQKDYVGFHDFDEDMINERYLTSENSLSVVDTIESESPNNGREGDLSFSEPKWLEGDESVALWVKWRGKWLAGIRCARADWPLSTLRAKPTHDRKKYFVIFFPHTKIYSWADTLLVRSIDEYPHPVAHKTHQVGLKLVKDLTAARRFIMQKLVVGMLNIVDQFHLNALTETARDVKVWKEFAMEASRCNGYSDFGRLLLKIYNCILGHYISVDWLQQSSPSWVERCQSANSAESVELLKEELFDSILWNDVNNLGDSPVQPILGSEWRTWKHDVAKWFSPSPPVSSSKDTPTRQISDDSYLTNLQASRKRPKLEVRRADTHASKVEFKGSDHTIALVNDTGFFNNQDTLSTLTAETLKHENNRKVSITNDLSSNLTNKWNEIVVEAADSDFLYTKENELTPINEMAIVKSVDPGSKNRQCIAFIEAKGRQCVRWANEGDVYCCVHLSSRFLAGSANAENPGQTDTPMCDGTTVVGTKCKHRSLPGSLYCKKHRPYAETEQNSSLAQNTMKRKHEENYTGSENMICKDMVLVNAETALQVVPVPSIAGDSLHGEMILYEKPMHSEKGHVVMEAPICIGSPPFDNTNPCREVPKRYSLYCEIHLPSWLKRARNGKSRIVSKEVFSELLRGCSSWEQKVHLHEACELFYRLFKSILSLRNQVPKDVQFQWALTEASKETGVGEFFTKLVQSEKERIKSMWGFNDDMDVPSVVAEQQPLLLMPLPINHSFDNENTIKCKICSTQFPDDQALGNHWMDSHKKEAQWLFRGYACAICLDSFTNKKLLETHVQERHHVQFVEQCMLLQCIPCGSHFGHSEQLWQHVLSAHQVDFKPSKSPEQQTFSTGEGSAVKHDQGNSTSSKNNSENPGGSRRLVCRFCGLKFDLLPDLGRHHQAAHMGPTNLLSNRPAKRGVRYYAYKLKSGRLSRPRFKKGLAAAASLRMRNKANANLKRCIQATKSIGVEGTAVQPHVTETTDISGLTKNQCSAVAKILFSEIQKTKPRPNNLDILSVARFACCKVNLVASLEEKFGILPEKLYLKAAKLCSDNNVVAKWHHEGFVCPKGCNSLKGQALQSPLASLPNGFGMPKSSNLSDLASDEWEVDEFHCIIDSQSLQLGSRKRAVVLCDDISFGKESVPVICVVDQELLHSLNADGSNEQDIITSKPWESFSYVTKPIIDQSLSLDSESPQLGCACSYSTCCPETCDHVYLFGDDYVDAKDIFGKPMRGRSPYDQNGRLILEEGYLVYECNGMCRCNKSCPNRVLQNGVRVKLEVFKTEKKGWAVRAGETILRGTFVCEYIGEVLDVQEAHNRRESYDTTNSSYFYDINARVNDMSRLIEEQVQYVIDATKNGNVSRFINHSCSPNLVSHQVIIESMDCERSHIGFYASRDIALGEELTYGFQYELVPGEGSPCLCESSKCRGRLH | 1500 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre9g00952 | 1500 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 816 | 837 | IPR013087 | - | |
Trre9g00952 | 1500 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 884 | 905 | IPR013087 | - | |
Trre9g00952 | 1500 | ProSiteProfiles | Post-SET domain profile. | 1484 | 1500 | IPR003616 | - | |
Trre9g00952 | 1500 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 951 | 979 | IPR013087 | - | |
Trre9g00952 | 1500 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 953 | 974 | IPR013087 | - | |
Trre9g00952 | 1500 | SMART | set_7 | 1345 | 1483 | IPR001214 | GO:0005515 | |
Trre9g00952 | 1500 | Pfam | Zinc finger C2H2-type, 3 repeats | 850 | 975 | IPR040689 | - | |
Trre9g00952 | 1500 | MobiDBLite | consensus disorder prediction | 911 | 946 | - | - | |
Trre9g00952 | 1500 | Pfam | Pre-SET motif | 1205 | 1337 | IPR007728 | GO:0005634|GO:0008270|GO:0034968|GO:0042054 | |
Trre9g00952 | 1500 | Gene3D | Classic Zinc Finger | 808 | 880 | - | - | |
Trre9g00952 | 1500 | ProSiteProfiles | Pre-SET domain profile. | 1266 | 1342 | IPR007728 | GO:0005634|GO:0008270|GO:0034968|GO:0042054 | |
Trre9g00952 | 1500 | PANTHER | HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 | 1 | 1500 | - | - | |
Trre9g00952 | 1500 | SUPERFAMILY | SET domain | 1196 | 1490 | IPR046341 | - | |
Trre9g00952 | 1500 | ProSiteProfiles | SET domain profile. | 1345 | 1477 | IPR001214 | GO:0005515 | |
Trre9g00952 | 1500 | SMART | preset_2 | 1202 | 1329 | IPR007728 | GO:0005634|GO:0008270|GO:0034968|GO:0042054 | |
Trre9g00952 | 1500 | Gene3D | SET domain | 1183 | 1481 | IPR046341 | - | |
Trre9g00952 | 1500 | SMART | c2h2final6 | 951 | 974 | IPR013087 | - | |
Trre9g00952 | 1500 | SMART | c2h2final6 | 848 | 871 | IPR013087 | - | |
Trre9g00952 | 1500 | SMART | c2h2final6 | 814 | 837 | IPR013087 | - | |
Trre9g00952 | 1500 | SMART | c2h2final6 | 882 | 905 | IPR013087 | - | |
Trre9g00952 | 1500 | Pfam | SET domain | 1356 | 1474 | IPR001214 | GO:0005515 | |
Trre9g00952 | 1500 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 848 | 871 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre9g00952 | Trre-Chr9 | 7334553 | 7341876 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre9g00952 | 100 | 1499 | C2H2 Transcription Factor Family | AT2G23740 | 50.989 | 0.0 | 1375 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SET | Trre9g00952 | Pre-SET | 3.4e-14 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre9g00952 | - | - | gmx:100786757 | 2341.23 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Trre9g00952 | 9 | 7334553 | 7341876 | Trre9g00952 | 9 | 7334553 | 7341876 | ECH |