Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00939 ATGTTCATAATTTTCTTATTGAGCAAAACAAGAGCACAAACCAACAACACAATCTGTTTGAATCGTTGTGGAGATGAAATTCTTGATTACCCTTTTGGATTCTCTGATGGTTGTGGAATCAAACTAAACTGTACTGATAACAAAGTTCAAATTCATGAGTTTCTGATTCAGAATATAACCAAAAACAGTATATTAATCTATCTTCCTGCAAAATGCAACCGTAGTATTCAATCTATTCAACCACTTTTCGGCGATAATTTTGCTCCAACAAGGAACAATAGTTTTCTAGTTCAAGATTGTTCAGCTCCTTTAGGTGGATGTGTGATTCCAGCTTCAAGTTTTGTTGGAAATCAGATTGAAGTTGAAAGCTGTGACAGGAAAAGTAGTAACATTAGTTGTTTTAATCAGCAATACCATAAGGGAGATGTTGATGTTTTGTCGTACGAGGAATTGAATAAAACTAGGTGTAACTATTTGTTCTCAGCTGTTGCTGTTGAACAAAGTAAGGAAATTTCGTTGCAGTTTCAAGCTATTGAATTGGCATGGTGGGTTAAAGGTTCTTGTCAATGTTCTAACAATGCTACTTGTTCAAATGTGACTCTACAAGGAAATGGTTCTGGATTTCGGTGTCATTGTTTGGATGGTTTCCGGGGAGATGGATTTGCCAATGGTACCGGTTGCCGGAGAGCTCCAAGTTGCAGTGCTTCAACACTAACATCCGGGGGATGTGGGAGTGCAACCAAAATCGGCGCTGTTGTCGGAGTGGCCGTAACCGGAGTTGTGATCGTGGCTGCTCTCATTATTATGTGCTTCTGTGCTAGGCGACGTTTTACTTGGTTGAGAAAACATACCAGAGTAAAGCGCCTACTACGTGAAGCTGCAGGAAACTCTATTGTGCCTCTCTACTCTTACAAAGACATAGAAAAAGCCACAAACTCTTTCTCTGATAAACAGAGGCTGGGAACCGGGGCATTCGGTACAGTCTATTCCGGAAAACTTCACAATGATGAGTTTGTTGCAATAAAGAAGATAAGGCATAGAGATACAAACAGTGTTGATCAAGTCATGAATGAGATCAAGCTCCTTTCTTCGGTGAGTCACCCAAATTTGGTTCGCCTCCTAGGTTGCTGCATTGAGGAGGGAGAGCAGATACTTGTTTATGAATATATGCCAAATGGAACGTTGTCTGAGCATTTGCAAAGAGAGAGAGGCTTGGCATGA 1221 0.4046 MFIIFLLSKTRAQTNNTICLNRCGDEILDYPFGFSDGCGIKLNCTDNKVQIHEFLIQNITKNSILIYLPAKCNRSIQSIQPLFGDNFAPTRNNSFLVQDCSAPLGGCVIPASSFVGNQIEVESCDRKSSNISCFNQQYHKGDVDVLSYEELNKTRCNYLFSAVAVEQSKEISLQFQAIELAWWVKGSCQCSNNATCSNVTLQGNGSGFRCHCLDGFRGDGFANGTGCRRAPSCSASTLTSGGCGSATKIGAVVGVAVTGVVIVAALIIMCFCARRRFTWLRKHTRVKRLLREAAGNSIVPLYSYKDIEKATNSFSDKQRLGTGAFGTVYSGKLHNDEFVAIKKIRHRDTNSVDQVMNEIKLLSSVSHPNLVRLLGCCIEEGEQILVYEYMPNGTLSEHLQRERGLA 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00939 406 ProSiteProfiles Protein kinase domain profile. 314 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00939 406 Gene3D Phosphorylase Kinase; domain 1 277 389 - -
Trre9g00939 406 SUPERFAMILY Protein kinase-like (PK-like) 290 403 IPR011009 -
Trre9g00939 406 ProSitePatterns Protein kinases ATP-binding region signature. 320 343 IPR017441 GO:0005524
Trre9g00939 406 FunFam Wall-associated receptor kinase-like 14 281 389 - -
Trre9g00939 406 ProSiteProfiles EGF-like domain profile. 184 222 IPR000742 -
Trre9g00939 406 Pfam Protein tyrosine and serine/threonine kinase 317 402 IPR001245 GO:0004672|GO:0006468
Trre9g00939 406 Gene3D Laminin 188 225 - -
Trre9g00939 406 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 6 403 IPR044652 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00939 Trre-Chr9 7220104 7223754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00939 11 404 Receptor kinase-like Gene Family AT2G23450 51.232 9.83e-129 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trre9g00939 PK_Tyr_Ser-Thr 6.3e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00939 - - gmx:100779130 539.265