Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00905 ATGAATCCTCCTCCTCCTCCGTCTATGGCTACTACTACAGGAGCAACCATTGATATGCCGATCATGCACGATAGTGACCGTTATGATTTCGTTCGTGATATTGGATCAGGGAATTTCGGTGTTGCTAGACTCATGAGAGATAAACATACTAAAGAACTTGTTGCTGTTAAGTATATTGAACGTGGTGATAAGATCGATGAAAATGTTAAGAGAGAAATAATCAATCACAGGTCTTTGAGACATCCTAATATTGTCAGGTTTAAGGAGGTAATTTTGACCCCTACTCATCTGGCTATTGTAATGGAATATGCATCTGGAGGAGAAATGTTTGAACGAATCAGCAAAGCAGGACGTTTTACTGAGGATGAGGCTCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTATTGCCATTCAATGCAAATATGTCATCGGGACCTGAAGTTGGAAAACACTTTGTTGGATGGAGACCCAGCACTTCATTTGAAGATTTGTGATTTTGGATACTCCAAGTCTTCGGTGCTTCATTCGCAACCAAAGTCAACTGTCGGAACTCCAGCATATATTGCTCCAGAAGTACTGCTGAAGCAAGAGTATGATGGAAAGATTGCAGATGTATGGTCATGTGGAGTAACCTTATATGTGATGCTAGTGGGATCATATCCCTTTGAAGATCCTGTTAATCCGAAGGATTTCCGGAAGACAATTCAGAGGGTTCTCAGTGTCCAGTATTCCGTTCCAGACTTTGTTCAAATATCTCCTGAATGTCGCGACATTATATCAAGAATCTTTGTTTTTGACCCTGCAGAGAGAATCACCATTCCAGAAATAATGAAAAATGAATGGTTTCGGAAGAATCTTCCAGCCGACTTGGTGAATGAAAAGGTATTCGATAACCAATTTGAAGAGCCAGATCAGCCCACGCAGAGCATGGACACGATCATGCAGATAATTTCAGAGGCTACCGTACCGGCAGCTGGGAGCTATTCTTTAGACCAGTTTATGTCTGATAACCTCGACATGGATGATGACATGGATGATATAGATTCTGACTATGAACTTGATGTAGATAGCAGCGGGGAGATTGTATACGCCATATAA 1104 0.4139 MNPPPPPSMATTTGATIDMPIMHDSDRYDFVRDIGSGNFGVARLMRDKHTKELVAVKYIERGDKIDENVKREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGEMFERISKAGRFTEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGDPALHLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKQEYDGKIADVWSCGVTLYVMLVGSYPFEDPVNPKDFRKTIQRVLSVQYSVPDFVQISPECRDIISRIFVFDPAERITIPEIMKNEWFRKNLPADLVNEKVFDNQFEEPDQPTQSMDTIMQIISEATVPAAGSYSLDQFMSDNLDMDDDMDDIDSDYELDVDSSGEIVYAI 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00905 367 Pfam Protein kinase domain 28 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00905 367 Gene3D Transferase(Phosphotransferase) domain 1 104 291 - -
Trre9g00905 367 ProSiteProfiles Protein kinase domain profile. 28 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00905 367 FunFam Serine/threonine-protein kinase SRK2E 19 103 - -
Trre9g00905 367 Gene3D Phosphorylase Kinase; domain 1 8 103 - -
Trre9g00905 367 SUPERFAMILY Protein kinase-like (PK-like) 9 327 IPR011009 -
Trre9g00905 367 PANTHER SERINE/THREONINE KINASE 27 310 - -
Trre9g00905 367 SMART serkin_6 28 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00905 367 ProSitePatterns Protein kinases ATP-binding region signature. 34 57 IPR017441 GO:0005524
Trre9g00905 367 FunFam Serine/threonine-protein kinase SRK2E 104 292 - -
Trre9g00905 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00905 Trre-Chr9 7008808 7013089 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00905 27 288 CBL-interacting serine-threonine protein kinases AT5G25110 44.203 1.68e-69 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Trre9g00905 Pkinase 1.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00905 K14498 - gmx:100783967 610.142