Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00902 ATGGAACAACAACTCAACTTAGATTTGACTTTAGCTTTAGCCTCTGTTCCCAAAACCGTTTCTCATTTCATCAACGACGTCGTTTCTCACACCAATAATTCATCTCAAAAACTTTCAAACCTTGATGACTTACTTCACAGATTGGAACAAGAAATGAACAAAGTTCTCGCTTTCAAACGTGAACTTCCTCTTTCCATAATCCTCCTTAACAATGCTATAGAAAGATTGAAGGATGAAAAAGAGAAAGTTAGGTTAATGAAAATGGAAGATCCAAAAAACTGTGGTCATAATAACAATAGTAAGAACAATTGGATGAGTTCTGTTCAGCTTTGGACTAATGAAAAAATTTCGAAGAATGAAGATGATGAAAGGTGTGTGTCAAAGAAGAGTAATGGTGGGGGGGTATTTATGGAATTTAATGGAAATTCTTTGAAGGAGGTTTCTCAAGTTCCAAGCTATAGTTTGGTGTCTGAAGTGAGTCATGGAAATTCCAAGAGTGGTGGTGGTGGTGGTAGTTCTGGATCGTCTTTGTTGCGAGTTGAGATACAGAATCAGCCGCAGCCGCCACATCCTTCGCAGCAGAATTCGAGGAAACAAAGGCGTAGCTGGTCATCTGAGCTTCATCGCCGTTTTGTTGATGCACTTCAACAGCTTGGTGGAGCACATGCAGCCACTCCTAAACAAATTAGGGAAAAGATGCAAGTGGATGGATTAACAAATGATGAAGTGAAAAGCCATTTGCAAAAATACAGGCTTCATGTTAGAAGATTCCCAATTTCTTCAATTGAAGAAGCTAATAAACTAGCCTTATATATGACACAAGATCAATATGGAGATACATCAAAGGGAAACATATCAGAGTCTGTTTCACCACAGGGTCCTCTTACTCCTCTTCTACTTGGAGGATCTGTTAAAGGTGTCTCGAGCCATGGAAGAAACAGTATGGATGCAGATGACGAGCAATCAGATTGCAGGAATTGGAAAGGTGATCAGGAGCAGCTACATGAAGCAGAATAA 1017 0.3963 MEQQLNLDLTLALASVPKTVSHFINDVVSHTNNSSQKLSNLDDLLHRLEQEMNKVLAFKRELPLSIILLNNAIERLKDEKEKVRLMKMEDPKNCGHNNNSKNNWMSSVQLWTNEKISKNEDDERCVSKKSNGGGVFMEFNGNSLKEVSQVPSYSLVSEVSHGNSKSGGGGGSSGSSLLRVEIQNQPQPPHPSQQNSRKQRRSWSSELHRRFVDALQQLGGAHAATPKQIREKMQVDGLTNDEVKSHLQKYRLHVRRFPISSIEEANKLALYMTQDQYGDTSKGNISESVSPQGPLTPLLLGGSVKGVSSHGRNSMDADDEQSDCRNWKGDQEQLHEAE 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00902 338 Coils Coil 66 89 - -
Trre9g00902 338 Pfam Myb-like DNA-binding domain 200 251 IPR001005 -
Trre9g00902 338 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 10 327 IPR044787 GO:0003700|GO:0006355
Trre9g00902 338 MobiDBLite consensus disorder prediction 279 338 - -
Trre9g00902 338 MobiDBLite consensus disorder prediction 312 338 - -
Trre9g00902 338 Coils Coil 31 61 - -
Trre9g00902 338 SUPERFAMILY Homeodomain-like 196 256 IPR009057 -
Trre9g00902 338 MobiDBLite consensus disorder prediction 184 200 - -
Trre9g00902 338 Gene3D - 197 254 - -
Trre9g00902 338 MobiDBLite consensus disorder prediction 184 205 - -
Trre9g00902 338 NCBIfam myb-like DNA-binding domain, SHAQKYF class 198 253 IPR006447 GO:0003677
Trre9g00902 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 255 IPR017930 -
Trre9g00902 338 MobiDBLite consensus disorder prediction 279 293 - -
Trre9g00902 338 FunFam Myb family transcription factor 197 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00902 Trre-Chr9 6980894 6982731 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00902 2 248 G2-like Transcription Factor Family AT4G37180 40.146 3.61e-48 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre9g00902 Myb_DNA-binding 3.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00902 - - pvu:PHAVU_002G021400g 326.25