Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00901 ATGGAACAACAACTCAACTTAGATTTGACTTTAGCTTTAGCCTCTGTTCCCAAAACCGTTTCTCATTTCATCAACGACGTCGTTTCTCACACCAATAATTCATCTCAAAAACTTTCAAACCTTGATGACTTACTTCACAGATTGGAACAAGAAATGAACAAAGTTCTCGCTTTCAAACGTGAACTTCCTCTTTCCATAATCCTCCTTAACAATGCTATAGAAAGATTGAAGGATGAAAAAGAGAAAGTTAGGTTAATGAAAATGGAAGATCCAAAAAACTGTGGTCATAATAACAATAGTAAGAACAATTGGATGAGTTCTGTTCAGCTTTGGACTAATGAAAAAATTTCGAAGAATGAAGATGATGAAAGGTGTGTGTCAAAGAAGAGTAATGGTGGGGGGGTATTTATGGAATTTAATGGAAATTCTTTGAAGGAGGTTTCTCAAGTTCCAAGCTATAGTTTGGTGTCTGAAGTGAGTCATGGAAATTCCAAGAGTGGTGGTGGTGGTGGTAGTTCTGGATCGTCTTTGTTGCGAGTTGAGATACAGAATCAGCCGCAGCCGCCACATCCTTCGCAGCAGAATTCGAGGAAACAAAGGCGTAGCTGGTCATCTGAGCTTCATCGCCGTTTTGTTGATGCACTTCAACAGCTTGGTGGAGCACATGCCACTCCTAAACAAATTAGGGAAAAGATGCAAGTGGATGGATTAACAAATGATGAAGTGAAAAGCCATTTGCAAAAATACAGGCTTCATGTTAGAAGATTCCCAATTTCTTCAATTGAAGAAGCTAATAAACTAGCCTTATATATGACACAAGATCAATATGGAGATACATCAAAGGGAAACATATCAGAGTCTGTTTCACCACAGGGTCCTCTTACTCCTCTTCTACTTGGAGGATCTGTTAAAGGTGTCTCGAGCCATGGAAGAAACAGTATGGATGCAGATGACGAGCAATCAGATTGCAGGAATTGGAAAGGTGATCAGGAGCAGCTACATGAAGCAGAATAA 1014 0.3955 MEQQLNLDLTLALASVPKTVSHFINDVVSHTNNSSQKLSNLDDLLHRLEQEMNKVLAFKRELPLSIILLNNAIERLKDEKEKVRLMKMEDPKNCGHNNNSKNNWMSSVQLWTNEKISKNEDDERCVSKKSNGGGVFMEFNGNSLKEVSQVPSYSLVSEVSHGNSKSGGGGGSSGSSLLRVEIQNQPQPPHPSQQNSRKQRRSWSSELHRRFVDALQQLGGAHATPKQIREKMQVDGLTNDEVKSHLQKYRLHVRRFPISSIEEANKLALYMTQDQYGDTSKGNISESVSPQGPLTPLLLGGSVKGVSSHGRNSMDADDEQSDCRNWKGDQEQLHEAE 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00901 337 Coils Coil 66 89 - -
Trre9g00901 337 MobiDBLite consensus disorder prediction 311 337 - -
Trre9g00901 337 Gene3D - 195 256 - -
Trre9g00901 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 254 IPR017930 -
Trre9g00901 337 MobiDBLite consensus disorder prediction 278 292 - -
Trre9g00901 337 FunFam Two-component response regulator 194 256 - -
Trre9g00901 337 MobiDBLite consensus disorder prediction 278 337 - -
Trre9g00901 337 Coils Coil 31 61 - -
Trre9g00901 337 MobiDBLite consensus disorder prediction 184 200 - -
Trre9g00901 337 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 10 326 IPR044787 GO:0003700|GO:0006355
Trre9g00901 337 MobiDBLite consensus disorder prediction 184 205 - -
Trre9g00901 337 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Trre9g00901 337 SUPERFAMILY Homeodomain-like 196 255 IPR009057 -
Trre9g00901 337 NCBIfam myb-like DNA-binding domain, SHAQKYF class 198 252 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00901 Trre-Chr9 6980894 6982731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00901 2 247 G2-like Transcription Factor Family AT4G37180 40.146 2.97e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre9g00901 Myb_DNA-binding 2.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00901 - - pvu:PHAVU_002G021400g 321.627