Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00897 ATGTCTTCATCATCAAATTCTCCGTGTGCGGCGTGCAAGTTTCTCCGGCGAAAATGCACACAAGAGTGCGTGTTTGCACCGTATTTTCCACCTGACAATCCTCAAAGATTTGCATATGTACACAAAGTTTTCGGGGCGAGTAACGTGGCAAAGCTGTTAAACGAACTTAATGCGGCTCAGCGTGATGACGCCGTGAAATCGTTGGCATATGAGGCTGAGGCGCGGCTTAGAGACCCGGTTTACGGCTGCGTTGGTCTTATTTCACTTCTTCAACATAAGCTAAGAGCAATTACAGGTGAACTTAATAATGCTAAAAAGGAACTTGCTACTTATATTGGTCCTCAAGCGCTTCAAGGTTTTCCCACAACTATTCTTCAACAACAGCAGCAGCATAATAACCCTTTTGGTGGTAATTCTCTTTACCCTTATAACAGTAACATTCCGGCCGTGACTGCGGCTAACCAGATGGTGATTCGTGATGCGCCGCAACCGCCACCGCAGCAGCAGATCTTGGAAGCTCATCAATTGGCTGCTGCTGTTGCTGCTAGAGAGCAACAGGAGATTTTTAGGACTTTTGATTCTCAACAGCAACAACAGGATTTTTTGAGGTTTAGTGGTGGGTTTGATGTGGATTCTGTTTCTAATTCTGCTGGTGGGTTCACACCAGTTTCTGCTGGTGCTGGTGTTGTTGCTGCTGATCAATTGTCTCCTTCTTTGGCTTTGGGATCTTTTGATAATACTTATCACCACATGCAACAATCACAACAAGCACAAGGAGAATCTCATCCTCATCCTCATCATCAGCAACAGCATCATAATCATCATCTTCCACTTGAGGCACAGTTATTGCTTCCTCCTCAGCAGAAACAAGCACAGCCACAAACTCAACATTCACCATTGACCCATCATCATCATTATCACCAACAACAACAGACGGAAAGCGAGGATTTTCAGCCTAGTTCTTACCTACCGGATACAAATGGATAG 987 0.4488 MSSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNAAQRDDAVKSLAYEAEARLRDPVYGCVGLISLLQHKLRAITGELNNAKKELATYIGPQALQGFPTTILQQQQQHNNPFGGNSLYPYNSNIPAVTAANQMVIRDAPQPPPQQQILEAHQLAAAVAAREQQEIFRTFDSQQQQQDFLRFSGGFDVDSVSNSAGGFTPVSAGAGVVAADQLSPSLALGSFDNTYHHMQQSQQAQGESHPHPHHQQQHHNHHLPLEAQLLLPPQQKQAQPQTQHSPLTHHHHYHQQQQTESEDFQPSSYLPDTNG 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00897 328 Coils Coil 87 107 - -
Trre9g00897 328 MobiDBLite consensus disorder prediction 251 328 - -
Trre9g00897 328 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Trre9g00897 328 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Trre9g00897 328 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 287 - -
Trre9g00897 328 MobiDBLite consensus disorder prediction 285 299 - -
Trre9g00897 328 MobiDBLite consensus disorder prediction 312 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00897 Trre-Chr9 6959844 6962112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00897 3 249 AS2 family AT5G66870 50.000 3.02e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre9g00897 LOB 1.5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00897 - - tpra:123910973 487.648