Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00890 ATGGGTATTTGCACTTCAAAATCCACACACTCCTCTCGCAACCTTCAACTTCCTCCATCCAACTCCGTTACAGTTAACGCCGCCACTTCTCAACCTCAAACTAACTCCGTTAATGGCGAAAACCAAAACCCTAAGGATAATACTGAAGAAAATGTTAAGAGATCTCCGTTTTTTCCGTTCTACAGTCCGAGTCCAGCTCATCAATTTTTCTCAAAGATGTCACCGGCGAGGAAATTTTTTAAAAAACCGTTTCCTCCTCCGTCTCCGGCGAAGCATATAAGATCGCTTCTAGCACGGCGGCATGGCTCGGTTAAGCCTAATGAAGCTTCGATACCGGAAGGTGGGGAAGAGGAGACTGTGTCTGTGGCTGCGCTTGATAAGAATTTTGGATTTTCCAAGCATTTTGGAAGTAAATATGATGTTGGAGATGAAGTTGGAAGAGGACATTTTGGTTATACTTGTGCTGCTAGGGTGAAGAAAGGTGATCTTAAAGGTCAACAAGTTGCTGTCAAAGTGATTCCTAAAGCCAAGATGACTACTGCTATTGCTATTGAGGATGTGAGAAGGGAAGTCAAAATATTGAGAGCTTTGAATGGACATAAGAATTTAGTGCGATTCTATGAGGCTTATGAAGATAATGCTAATGTCTATATAGTAATGGAATTGTGTGAAGGTGGAGAGCTGTTGGATAGAATATTATCAAGAGGTGGGAAATATACAGAGGAAGATGCAAAAGCTATCCTGAGACAAATACTGAATGCTGCTGCATTTTGCCATCTACAGGGTGTTGTGCATCGTGATCTTAAACCAGAGAACTTCTTGTTCGCATCCGCAGATGAAAACTCAGAACTGAAGGCCATAGACTTTGGGCTGTCAGATTTTGTTAAACTAGATGAAAGGCTCAATGATATTGTGGGTAGTGCATACTATGTGGCTCCTGAAGTTCTACATAGAGCTTATAGTACCGAGGCTGATGTTTGGAGTATTGGAGTGATTGCATATATTTTATTATGTGGCAGCCGTCCCTTTTGGGCTCGGACTGAGTCTGGCATCTTTCGTACTGTATTGAAAGCAGATCCAAGTTTTGACGAACCTCCTTGGCCTTCTCTATCAGACGAGGCAAGGGATTTTGTTAAGCGATTACTAAATAAAGATCCAAGGAAAAGGATGAGTGCAGCACAGGCATTAAGTCATCCATGGATTAAAAACTACGAGGATGTGGAATTGCCTTTGGATATTTTAGTATTCAAGCTCCTGAAGACATACATGCGTTCTTCATCTCTAAGAAGAGCTGCTTTAAGGGCTCTGTCTAAGACATTAACTGAGGATGATCTCGTTTATTTGAAGGAGCAATTTGCACTCTTGAAGCCTAACAAAAATGGCACCATTAGCTTCGAAAATATACAAGCGGCCTTTACGGTAAATGCGACAGATGCTATGAAGGAGTCACGCATTGCCGACTTTCTGGCATCACTTAATGCATTGCAATATAGAAGGATGGGTTTTGACGAGTTCTGCGCAGCTACACTTAGTGTTCATCAACTTGAAGCACTTGATCACTGGGAAAAGCGTGCACGTTGTGCCTTTGACCTGTTTGAAAAGGATGGAAACAAGGCCATAGTCATCGACGAATTAGCTTCGGAGCTTGGGCTTGGTCCCTCTATCCCTGTACATGCTGTTCTTCATGATTGGATTCGACACACTGATGGGAAATTAAGCTTCCTTGGATTTGTGAAATTGTTGCATGGCCCATCAAGAAGTCTTGCAAAAGCTCAATAA 1779 0.4227 MGICTSKSTHSSRNLQLPPSNSVTVNAATSQPQTNSVNGENQNPKDNTEENVKRSPFFPFYSPSPAHQFFSKMSPARKFFKKPFPPPSPAKHIRSLLARRHGSVKPNEASIPEGGEEETVSVAALDKNFGFSKHFGSKYDVGDEVGRGHFGYTCAARVKKGDLKGQQVAVKVIPKAKMTTAIAIEDVRREVKILRALNGHKNLVRFYEAYEDNANVYIVMELCEGGELLDRILSRGGKYTEEDAKAILRQILNAAAFCHLQGVVHRDLKPENFLFASADENSELKAIDFGLSDFVKLDERLNDIVGSAYYVAPEVLHRAYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRTVLKADPSFDEPPWPSLSDEARDFVKRLLNKDPRKRMSAAQALSHPWIKNYEDVELPLDILVFKLLKTYMRSSSLRRAALRALSKTLTEDDLVYLKEQFALLKPNKNGTISFENIQAAFTVNATDAMKESRIADFLASLNALQYRRMGFDEFCAATLSVHQLEALDHWEKRARCAFDLFEKDGNKAIVIDELASELGLGPSIPVHAVLHDWIRHTDGKLSFLGFVKLLHGPSRSLAKAQ 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00890 592 SUPERFAMILY Protein kinase-like (PK-like) 136 429 IPR011009 -
Trre9g00890 592 Gene3D - 419 510 - -
Trre9g00890 592 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Trre9g00890 592 FunFam CDPK-related kinase 3 131 303 - -
Trre9g00890 592 Pfam Protein kinase domain 139 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00890 592 ProSitePatterns Protein kinases ATP-binding region signature. 145 171 IPR017441 GO:0005524
Trre9g00890 592 PANTHER SERINE/THREONINE-PROTEIN KINASE 124 567 - -
Trre9g00890 592 SMART serkin_6 139 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00890 592 Gene3D Transferase(Phosphotransferase) domain 1 229 417 - -
Trre9g00890 592 Gene3D - 426 580 - -
Trre9g00890 592 CDD STKc_CAMK 138 400 - -
Trre9g00890 592 Gene3D Phosphorylase Kinase; domain 1 132 228 - -
Trre9g00890 592 FunFam Calcium-dependent protein kinase SK5 311 406 - -
Trre9g00890 592 ProSiteProfiles Protein kinase domain profile. 139 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00890 592 MobiDBLite consensus disorder prediction 1 57 - -
Trre9g00890 592 FunFam CDPK-related kinase 1 437 510 - -
Trre9g00890 592 FunFam CDPK-related kinase 1 132 227 - -
Trre9g00890 592 MobiDBLite consensus disorder prediction 1 45 - -
Trre9g00890 592 SUPERFAMILY EF-hand 429 583 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00890 Trre-Chr9 6903853 6908032 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00890 1 592 EF-hand Containing Proteins AT3G50530 71.024 0.0 911
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre9g00890 Pkinase 3.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00890 K00924 - gmx:100815721 925.235