Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00877 ATGAATTGGGTTCGTGGTCACTCCCTAGGTAGTGGAAGTTTTGCCACCGTCTATTTAGCCAAACACACAAAAGATTATGGTAACTTTCCGTCTCTCACCGCCGTCAAATCATGCCATCTTGACAATTGTTTTTCTCTCCAAAACGAAAAACGTATACTTGACCAGTTAGGATCATCCCCACATATTATCAAATGTTTTGGTCACGATCAAACTTTTGAAAACGATCAAGAGTATTATAATATTTTTTTGGAATACGCTGCCGGTGGAACTCTCAACGATCAACTCTATAATTACGGTGGTAAGTTCACGGAGAAACATGTCCGTCGTTACACGAGATCTATTGTTGAAGGACTCAAGTACATTCACGAAAACGGTTTTGTTCACTGCGACTTGAAATTACCAAACATTCTCGTATTCGACGATGACAACATTAAGATTTCAGATTTTGGTCTTGCGAAAGAGAAAGGATTAGTTGATAAGAAGCAATATAGGGGAACTCCAATGTATATGTCGCCAGAAGCAATAAATGACAATGTACATGAGTCGCCAGCAGATATATGGGCTCTTGGTTGTGCAGTTGTGGAGATGATTACCGGAGAACCCGTGTGGAAGAACGAAACAGATATGTGGATGTTGTTCACTCGGATTGTGATAAGGGAAGAACAACCATTTATTCCGGACGAATTATCACAAGAAGGGAAAGATTTTCTTGATAAGTGTTTTGCTAGGGATCCTTTGAAAAGATGGAGTGCAGATATGCTTTTGAAACACCCTTTTATCTCCGAAGATGAATCTGTTTCGTCGGTGAAGGTGTTTACTAATGAGTCGTCGTTGTCAACATCTCCAAAAACTCACTTTGATTATCCAAGTTGGGTTTCCTCCACTATTACGACTTTGTGTACTAGTTCAAAACAATGGATTGGCATGAAATTCGAGCATTGTTTTTGTTCGCAAGAGAAGACATTTGAACAACTAGTCACAGATCAGATGCCGTTAAATTGA 1002 0.3952 MNWVRGHSLGSGSFATVYLAKHTKDYGNFPSLTAVKSCHLDNCFSLQNEKRILDQLGSSPHIIKCFGHDQTFENDQEYYNIFLEYAAGGTLNDQLYNYGGKFTEKHVRRYTRSIVEGLKYIHENGFVHCDLKLPNILVFDDDNIKISDFGLAKEKGLVDKKQYRGTPMYMSPEAINDNVHESPADIWALGCAVVEMITGEPVWKNETDMWMLFTRIVIREEQPFIPDELSQEGKDFLDKCFARDPLKRWSADMLLKHPFISEDESVSSVKVFTNESSLSTSPKTHFDYPSWVSSTITTLCTSSKQWIGMKFEHCFCSQEKTFEQLVTDQMPLN 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00877 333 Gene3D Transferase(Phosphotransferase) domain 1 2 321 - -
Trre9g00877 333 Pfam Protein kinase domain 5 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00877 333 SMART serkin_6 3 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00877 333 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Trre9g00877 333 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 293 - -
Trre9g00877 333 ProSiteProfiles Protein kinase domain profile. 3 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00877 333 SUPERFAMILY Protein kinase-like (PK-like) 3 296 IPR011009 -
Trre9g00877 333 CDD STKc_MAPKKK 2 260 - -
Trre9g00877 333 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00877 Trre-Chr9 6746781 6747782 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00877 1 331 MAP Kinase Kinase Kinase AT5G67080 44.857 9.30e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trre9g00877 Pkinase 6.3e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00877 - - tpra:123904139 571.237