Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00876 ATGGCTTGGGTTCGTGGTCACTTGTTAGGCAGCGGAAGCTTTGCCACCGTTAACTTAGCTATGTTAAGAGATAATCCATTGTTTGTTAGATCTTCTCCGCATGTTATTAACTGTTTTGGCGATGATCACACTTTCGAAGACGGCGAAGATTGTTATAATATCTTTCTAGAATATGCCGTTGGTGGTACTCTCTTTGATCAACTCAAGAATTTCGGTGGTAAGTTACCGGAAACTGTTGTTCGTCGGTACACGAGGTCTATCCTTGAAGGACTTAAACATGTTCATGAAAACGGTTTTGTTCACTGTGACGTGAAGCTACAAAACATTCTTGTATTTGAAGATGGCAATGTTAAGATTTCGGATTTTGGTCTTGCAAAGGAGAAAGGTTTAAAGAACGATGGAAAATTGGAATGCAGAGGAACTCCGATGTTTATATCGCCGGAAGCAGTGAACGACAATGTTTATGAATCGCCGGCAGACATATGGGCACTTGGTTGCGCGATAGTGGAGATGGTTACGGGAAAGCCTGCATGGAATTTTAGTGGGTCAAATATATGGTCCTTGTTGATTAGAATTGGGATAGGAGAAGAATTGCCGTTGATTCCCGATGAATTGTCACAAGAAGGAAAAGATTTTCTTCAAAAAATATTCGTAAAGGATCCATTGAAAAGATGGACAACAAAGATGCTTTTGAAACACCCTTTTATCTCCGATGATAAAAATGTATCATTGGTGAAAGAGTTAATTAATAAGTCGCCGTCATTGCCATTGGTTGGAATTTGA 783 0.3972 MAWVRGHLLGSGSFATVNLAMLRDNPLFVRSSPHVINCFGDDHTFEDGEDCYNIFLEYAVGGTLFDQLKNFGGKLPETVVRRYTRSILEGLKHVHENGFVHCDVKLQNILVFEDGNVKISDFGLAKEKGLKNDGKLECRGTPMFISPEAVNDNVYESPADIWALGCAIVEMVTGKPAWNFSGSNIWSLLIRIGIGEELPLIPDELSQEGKDFLQKIFVKDPLKRWTTKMLLKHPFISDDKNVSLVKELINKSPSLPLVGI 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00876 260 SUPERFAMILY Protein kinase-like (PK-like) 4 248 IPR011009 -
Trre9g00876 260 Gene3D Transferase(Phosphotransferase) domain 1 3 255 - -
Trre9g00876 260 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 31 241 - -
Trre9g00876 260 Pfam Protein kinase domain 33 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00876 260 CDD STKc_MAPKKK 3 236 - -
Trre9g00876 260 ProSiteProfiles Protein kinase domain profile. 1 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00876 260 ProSitePatterns Serine/Threonine protein kinases active-site signature. 99 111 IPR008271 GO:0004672|GO:0006468
Trre9g00876 260 SMART serkin_6 3 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00876 Trre-Chr9 6739746 6745499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00876 1 257 MAP Kinase Kinase Kinase AT5G67080 45.847 5.91e-90 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trre9g00876 Pkinase 4.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00876 - - gmx:100782937 359.377