Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00871 ATGTATACCAAAGTGTTGAGGAATCCTTTAGTGAGTACAGAACATGCTGTGAAGGCAAATGGCATCAAAACTTCAAAAAGGACAAAAACTTTACAACAAAGCAATATCAAACCAATTTTATCAGTGTTAGATCATGACGGGGATTGGTGCTTCTATACTTCGTTTTTCCATGACTGTTTTGTAAATGGTTGTGATGGGTCCATTTTATTGGATGACACCGCAACATTTACCGGTGAAAAAAATGCGGCACCGAATAAAAACTCGGCGAGGGGATTCGAAGTAATTGATGCCATCAAAAGCAGTGTTGCAGCTTCTTGCAGTGCCACAGTTTCATGTGCTGATATTTTAGCACTTGCAACTCGAGATGGCATAGCTTTGCTTGGAGGACCCTCATGGATACTACCACTTGGAAGAAGAGATGTAAGAACAGCAAGTCAAAGTGCAGCCAACACCCAACTCCCTTCACCATCATCATACCTTGCAACTCTCATTAAAATGTTTCAAAACAAAGGTCTAACAGCAAGTGATCTAACTGTCCTTTCTGGTGCACACACAATAGGACAAGCAGAATGTCAAATTTTCAGACTCGAATTTACAATGAAACCAATATTGAAAAAACATGTTATTATTTTTACATTTTTATTAATTGAATTAATAAAGACCGAATCGCAACTGTCATATGTCATTATTTTATTTATTTCATTATAG 708 0.3729 MYTKVLRNPLVSTEHAVKANGIKTSKRTKTLQQSNIKPILSVLDHDGDWCFYTSFFHDCFVNGCDGSILLDDTATFTGEKNAAPNKNSARGFEVIDAIKSSVAASCSATVSCADILALATRDGIALLGGPSWILPLGRRDVRTASQSAANTQLPSPSSYLATLIKMFQNKGLTASDLTVLSGAHTIGQAECQIFRLEFTMKPILKKHVIIFTFLLIELIKTESQLSYVIILFISL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00871 235 PRINTS Plant peroxidase signature 175 187 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre9g00871 235 PRINTS Plant peroxidase signature 50 70 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre9g00871 235 PRINTS Plant peroxidase signature 90 103 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre9g00871 235 PRINTS Plant peroxidase signature 109 119 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre9g00871 235 PRINTS Plant peroxidase signature 128 143 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre9g00871 235 ProSiteProfiles Plant heme peroxidase family profile. 55 195 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre9g00871 235 ProSitePatterns Peroxidases proximal heme-ligand signature. 176 186 IPR019793 -
Trre9g00871 235 PANTHER PEROXIDASE 72-RELATED 54 196 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre9g00871 235 Gene3D Peroxidase, domain 2 154 196 - -
Trre9g00871 235 SUPERFAMILY Heme-dependent peroxidases 55 198 IPR010255 GO:0004601|GO:0006979|GO:0020037
Trre9g00871 235 Pfam Peroxidase 53 199 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre9g00871 235 Gene3D - 55 153 - -
Trre9g00871 235 PRINTS Haem peroxidase superfamily signature 128 140 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre9g00871 235 PRINTS Haem peroxidase superfamily signature 110 127 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre9g00871 235 PRINTS Haem peroxidase superfamily signature 48 62 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre9g00871 235 PRINTS Haem peroxidase superfamily signature 176 191 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00871 Trre-Chr9 6714199 6718662 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00871 55 195 Peroxidase AT5G05340 65.248 4.68e-66 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00871 K00430 - gmx:100803503 244.588