LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre9g00862	ATGTCGCAACGGTCGGTGCCGGCGCCGTTTTTGACTAAGACATATAATATGGTGGATGATTTTGCGACGGATGATGTGATATCATGGAGTGAAAATGGTGAAAGTTTTGTTGTGTGGAAACATGCGGATTTTGCAAGGGATTTGCTACCAAAATATTTTAAGCACAATAATTTCTCTAGCTTTGTTCGCCAGCTTAACACATATGGATTTCGAAAAGTCGTGCCAGATAAATGGGAATTTGCAAACGAAAATTTCAAGCAAGGCCAAAAACACCTCCTCATCGATATCAAACGCCGCAAAACTATACCCCAACCGTCATTACAGCCTCCAGAACCTGAAAAAACCAACGCCAACAACTCCTCTCCATCAAACTCCGCCAACGACGGAGGAGGATCCACCTCCAGCTCAACCTCTTCTCCCGATTCAAAAAACCCGGGATCAATCGAAACAACACTTCCCCAGAGCGTCAATTTATCGAGCGAGAATGAGAAATTGAAAAAAGATAACGAAACACTGAGTTACGAATTGGCACGTGCTAAGAAACAGTGCGATGAATTGGTTGCTTTTCTAAAAGAAGGTTTAAATGTGGGACCTGATCAAATAGATCGCATTATGAAGCAACATGGAAACTATGAATCTGTTCAAAATGCGGTTGGTGAAGGTGAAGAAAATGGAAGAGATTGTTTGAAATTGTTTGGTGTTTGGTTGAAAGAAGAAGATTATACAAAGAAAAGAAAGAATAACATGAGAGGCTGTGAAGACCAATTGGGCTTTGGTGGGCCTAAGGCTAAAGTGATGAACAACAATGTTGTTGACTTTAGTGCTGTCAATGTTGTGAACATGATGAAAAGTGGCAAGGTTTGTAACTAA	870	0.4092	MSQRSVPAPFLTKTYNMVDDFATDDVISWSENGESFVVWKHADFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDKWEFANENFKQGQKHLLIDIKRRKTIPQPSLQPPEPEKTNANNSSPSNSANDGGGSTSSSTSSPDSKNPGSIETTLPQSVNLSSENEKLKKDNETLSYELARAKKQCDELVAFLKEGLNVGPDQIDRIMKQHGNYESVQNAVGEGEENGRDCLKLFGVWLKEEDYTKKRKNNMRGCEDQLGFGGPKAKVMNNNVVDFSAVNVVNMMKSGKVCN	289

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre9g00862	289	ProSitePatterns	HSF-type DNA-binding domain signature.	49	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre9g00862	289	SMART	hsfneu3	6	99	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre9g00862	289	Pfam	HSF-type DNA-binding	10	99	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre9g00862	289	PRINTS	Heat shock factor (HSF) domain signature	10	33	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre9g00862	289	PRINTS	Heat shock factor (HSF) domain signature	61	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre9g00862	289	PRINTS	Heat shock factor (HSF) domain signature	48	60	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre9g00862	289	MobiDBLite	consensus disorder prediction	101	164	-	-
	Trre9g00862	289	Coils	Coil	162	182	-	-
	Trre9g00862	289	FunFam	Heat stress transcription factor B-4	2	100	-	-
	Trre9g00862	289	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	5	208	IPR027725	-
	Trre9g00862	289	MobiDBLite	consensus disorder prediction	111	160	-	-
	Trre9g00862	289	SUPERFAMILY	"Winged helix" DNA-binding domain	7	99	IPR036390	-
	Trre9g00862	289	Gene3D	-	2	101	IPR036388	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre9g00862	Trre-Chr9	6657087	6658883	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre9g00862	2	289	HSF	AT4G36990	49.664	1.39e-79	241

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Trre9g00862		HSF_DNA-bind	1.8e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre9g00862	K09419		-	gmx:100791543	371.703