LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre9g00840	ATGGAACAACGAAAGCTTGTGGTTTTGGGGATCCCATGGGATGTTGATACCGAGGGCTTGAAAGAATACATGAGCAAATATGGCGAACTAGAAGATTGCATTGTCATGAAGGAGCGTTCAACTGGACGATCTCGTGGTTTTGGATATGTTACATTTGCTTCAGTGGATGATGCCAAGGAAGTATTGTCAGGTGAACATACTCTTGGTAATAGGATGCTGGAAGTCAAAGTGGCCACACCGAAGGAGGAGATGAGGGCACCAGCCAAAAAAGCTACCAGAATTTTTGTGGCCAGGATTCCACAAGAAGTAACAGAAGCAACTTTTAGAAGTCATTTTGAGAAATATGGTGATATAACAGATTTGTACATGCCAAAGGATCAAGGCTCAAAAATGCATCGTGGAATTGGTTTTATCACTTTTGCAAATGCAGAATCTGTGGAGAATTTGATGTCAGAAACCCATGAACTCGGAGGTTCTGCTGTAGTGGTTGATCGAGCTACACCTAAGGATGATGACATTAAGCCAACTAGCAGAGTGTCAGGTAGAATGTCACAGGGAGGATATGGTGCATACAATGCATATATTTCTACAGCAACTAGATATGCAGCACTCGGAGCTCCTACTTTGTATGATCGTCCTGGCCCAGTTTATGGAAGGGGAGAGCCTCGTCGGAGAATTAGCAAAAAGATTTTTGTTGGTCGTCTCCCCCCAGAAGCAAATTCTGAGGATCTCCATCAATATTTTGGAAGATTTGGCCGTATAGAAGATGTTTACATTCCCAGAGATCCTAAGAGAACAGGTCACAGGGGTTTTGGATTTGTTACTTTTGCTGATGAAGGTGTAGCAGACCGTGTCTCTCGAAGGTCTCATGAGATTTGTGGACACCAGGTGGCAATAGATTCAGCCACACCTGTTGACGATACTGAGCCCAGTGAGAATTTTATGATGAACAGTATGGAATCTTTTGGGGGATATGGTGGTCCAATGCGAAGTTATGGGAGGATGTATGGTGGTGGTTTAGACTACGATGATTGGGGTTATGGAGTTCCCGGTGGGAGGCCATTAAGAGCAGATTATCAAGAGCAGATTGGGAGGCCGTCAAGAGTAGATTACCAAGAGCAGATTGGGAGGCCATCAAGAGTAGATTACCAAGAGCAGATCGGGAGGCCATCAAGAGTAGATTATCAAGAGCAGATTGGGAGGCCATCAAGAGCAGATTGGAGGTACAGGCCATACTAG	1239	0.4463	MEQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSGEHTLGNRMLEVKVATPKEEMRAPAKKATRIFVARIPQEVTEATFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFANAESVENLMSETHELGGSAVVVDRATPKDDDIKPTSRVSGRMSQGGYGAYNAYISTATRYAALGAPTLYDRPGPVYGRGEPRRRISKKIFVGRLPPEANSEDLHQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSRRSHEICGHQVAIDSATPVDDTEPSENFMMNSMESFGGYGGPMRSYGRMYGGGLDYDDWGYGVPGGRPLRADYQEQIGRPSRVDYQEQIGRPSRVDYQEQIGRPSRVDYQEQIGRPSRADWRYRPY	412

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre9g00840	412	FunFam	RNA-binding family protein isoform 1	225	308	-	-
	Trre9g00840	412	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	6	68	IPR000504	GO:0003723
	Trre9g00840	412	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	230	285	IPR000504	GO:0003723
	Trre9g00840	412	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	94	152	IPR000504	GO:0003723
	Trre9g00840	412	PANTHER	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED	224	370	-	-
	Trre9g00840	412	FunFam	heterogeneous nuclear ribonucleoprotein 1	2	83	-	-
	Trre9g00840	412	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	228	304	IPR000504	GO:0003723
	Trre9g00840	412	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	92	168	IPR000504	GO:0003723
	Trre9g00840	412	Gene3D	-	224	309	IPR012677	-
	Trre9g00840	412	Gene3D	-	86	197	IPR012677	-
	Trre9g00840	412	SMART	rrm1_1	229	300	IPR000504	GO:0003723
	Trre9g00840	412	SMART	rrm1_1	93	164	IPR000504	GO:0003723
	Trre9g00840	412	SMART	rrm1_1	5	76	IPR000504	GO:0003723
	Trre9g00840	412	FunFam	heterogeneous nuclear ribonucleoprotein 1	84	176	-	-
	Trre9g00840	412	SUPERFAMILY	RNA-binding domain, RBD	227	328	IPR035979	GO:0003676
	Trre9g00840	412	SUPERFAMILY	RNA-binding domain, RBD	89	190	IPR035979	GO:0003676
	Trre9g00840	412	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	4	80	IPR000504	GO:0003723
	Trre9g00840	412	Gene3D	-	1	85	IPR012677	-
	Trre9g00840	412	SUPERFAMILY	RNA-binding domain, RBD	3	86	IPR035979	GO:0003676

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre9g00840	Trre-Chr9	6508260	6518179	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre9g00840	6	278	Eukaryotic Initiation Factors Gene Family	AT3G16380	23.843	7.06e-14	71.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre9g00840	K14411		-	gmx:100795240	636.721