Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00839 ATGGAACAACGAAAGCTTGTGGTTTTGGGGATCCCATGGGATGTTGATACCGAGGGCTTGAAAGAATACATGAGCAAATATGGCGAACTAGAAGATTGCATTGTCATGAAGGAGCGTTCAACTGGACGATCTCGTGGTTTTGGATATGTTACATTTGCTTCAGTGGATGATGCCAAGGAAGTATTGTCAGGTGAACATACTCTTGGTAATAGGATGCTGGAAGTCAAAGTGGCCACACCGAAGGAGGAGATGAGGGCACCAGCCAAAAAAGCTACCAGAATTTTTGTGGCCAGGATTCCACAAGAAGTAACAGAAGCAACTTTTAGAAGTCATTTTGAGAAATATGGTGATATAACAGATTTGTACATGCCAAAGGATCAAGGCTCAAAAATGCATCGTGGAATTGGTTTTATCACTTTTGCAAATGCAGAATCTGTGGAGAATTTGATGTCAGAAACCCATGAACTCGGAGGTTCTGCTGTAGTGGTTGATCGAGCTACACCTAAGGCAAGAGATGATGACATTAAGCCAACTAGCAGAGTGTCAGGTAGAATGTCACAGGGAGGATATGGTGCATACAATGCATATATTTCTACAGCAACTAGATATGCAGCACTCGGAGCTCCTACTTTGTATGATCGTCCTGGCCCAGTTTATGGAAGGGGAGAGCCTCGTCGGAGAATTAGCAAAAAGATTTTTGTTGGTCGTCTCCCCCCAGAAGCAAATTCTGAGGATCTCCATCAATATTTTGGAAGATTTGGCCGTATAGAAGATGTTTACATTCCCAGAGATCCTAAGAGAACAGGTCACAGGGGTTTTGGATTTGTTACTTTTGCTGATGAAGGTGTAGCAGACCGTGTCTCTCGAAGGTCTCATGAGATTTGTGGACACCAGGTGGCAATAGATTCAGCCACACCTGTTGACGATACTGAGCCCAGTGAGAATTTTATGATGAACAGTATGGAATCTTTTGGGGGATATGGTGGTCCAATGCGAAGTTATGGGAGGATGTATGGTGGTGGTTTAGACTACGATGATTGGGGTTATGGAATTGGGAGGCCATCAAGAGCAGATTGGAGGTACAGGCCATACTAG 1095 0.4402 MEQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSGEHTLGNRMLEVKVATPKEEMRAPAKKATRIFVARIPQEVTEATFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFANAESVENLMSETHELGGSAVVVDRATPKARDDDIKPTSRVSGRMSQGGYGAYNAYISTATRYAALGAPTLYDRPGPVYGRGEPRRRISKKIFVGRLPPEANSEDLHQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSRRSHEICGHQVAIDSATPVDDTEPSENFMMNSMESFGGYGGPMRSYGRMYGGGLDYDDWGYGIGRPSRADWRYRPY 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00839 364 SMART rrm1_1 231 302 IPR000504 GO:0003723
Trre9g00839 364 SMART rrm1_1 93 164 IPR000504 GO:0003723
Trre9g00839 364 SMART rrm1_1 5 76 IPR000504 GO:0003723
Trre9g00839 364 FunFam heterogeneous nuclear ribonucleoprotein 1 2 83 - -
Trre9g00839 364 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Trre9g00839 364 SUPERFAMILY RNA-binding domain, RBD 4 171 IPR035979 GO:0003676
Trre9g00839 364 FunFam heterogeneous nuclear ribonucleoprotein 1 84 178 - -
Trre9g00839 364 Gene3D - 85 198 IPR012677 -
Trre9g00839 364 FunFam RNA-binding family protein isoform 1 227 310 - -
Trre9g00839 364 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 226 349 - -
Trre9g00839 364 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 152 IPR000504 GO:0003723
Trre9g00839 364 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 232 287 IPR000504 GO:0003723
Trre9g00839 364 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 68 IPR000504 GO:0003723
Trre9g00839 364 SUPERFAMILY RNA-binding domain, RBD 229 330 IPR035979 GO:0003676
Trre9g00839 364 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Trre9g00839 364 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 230 306 IPR000504 GO:0003723
Trre9g00839 364 Gene3D - 1 84 IPR012677 -
Trre9g00839 364 Gene3D - 226 311 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00839 Trre-Chr9 6508260 6518179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00839 6 280 Eukaryotic Initiation Factors Gene Family AT3G16380 23.322 1.44e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00839 K14411 - gmx:100795240 654.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00839 9 6508260 6518179 Trre9g00839 9 6508260 6518179 ECH