Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00835 ATGGATAATGAAGACATAATGAAAACTTTAGGAAATGTTGAAATGATGACAATGATGATGCAAATGGACAAGTTTCATGATTCATATGAACCTTTTTATACCAACAATGAAAACGATCATTTCCCTTATGTAACTTCATCATTCACACCTTCTTTGATCAATCCTCAACCTATCTCTTATCCGATGACACCGTCTCTTCAAACATCGAACAGAGTTCAAATCTCATCAGAGACGGTTAACAACGCTTCGTTTTCGTCCTACCCTGAGAAAAAGACATCAATGTCAGCAATGAGAGAGATGATATTCCGTATGGCGGTTATGCAACCGATTCATATCGATCCAGAAACGATAAAACCACCAAAGAGAAAGAATGTGAAGATTTCAAAGGATCCACAGAGTGTAGCAGCAAGACATAGAAGAGAAAGAATTAGTGAAAGAATAAGGATATTGCAAAGATTAGTTCCTGGTGGAACTAAAATGGATACAGCTTCAATGTTAGATGAAGCTATACATTATGTGAAGTTTTTGAAGAAACAAGTTCAAACATTGGAACAAGCAGGGGCAAATAAACCTATGAATTTTGTTGGGTTTTCAGGAGTTGTTTCTAATGGGAATTTTAATTATTCTTCTAATTTGCTTAGAGGTTGTTCATCACCTTGTCAAATTGTGGGTCCTACTTCCAAAAAAATGCTTAGTTGA 699 0.3562 MDNEDIMKTLGNVEMMTMMMQMDKFHDSYEPFYTNNENDHFPYVTSSFTPSLINPQPISYPMTPSLQTSNRVQISSETVNNASFSSYPEKKTSMSAMREMIFRMAVMQPIHIDPETIKPPKRKNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGANKPMNFVGFSGVVSNGNFNYSSNLLRGCSSPCQIVGPTSKKMLS 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00835 232 CDD bHLH_AtIND_like 128 184 - -
Trre9g00835 232 SMART finulus 133 182 IPR011598 GO:0046983
Trre9g00835 232 Coils Coil 166 186 - -
Trre9g00835 232 Gene3D - 126 193 IPR036638 GO:0046983
Trre9g00835 232 FunFam BHLH transcription factor 130 193 - -
Trre9g00835 232 Pfam Helix-loop-helix DNA-binding domain 137 176 IPR011598 GO:0046983
Trre9g00835 232 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 185 IPR036638 GO:0046983
Trre9g00835 232 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 176 IPR011598 GO:0046983
Trre9g00835 232 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 35 210 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00835 Trre-Chr9 6463383 6464081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00835 1 185 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 52.336 2.26e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre9g00835 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00835 - - gmx:100796649 229.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00835 9 6463383 6464081 Trre9g00835 9 6463383 6464081 ECH