Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00830 ATGGGTTGGGTTCGTGGTCACTTGTTAGGTAGCGGCAGCTTTGCCACCGTCAACTTAGCTACACACACAAACAATTCCGATAACTTTCCGTCTATTACCGCCGTCAAATCCTCCGATACTTACTATTCTCATCTTCTCCAAAATGAGAAACAAATACTTGATCGTTTAGGATCTTCTCCGCATGTTATCAATTGCTTTGGCGACGATAACACTTTTGAAGACGGCGAAGAGTGTTATAATATCTTTCTAGAATATGCCTCTGGTGGTACTCTCTTTGATCAACTCAAGAATTACGGTGGTAAGTTACCAGAAACCGTTGTTCGTCGTTACACGAGGTCTATCCTTGAAGGACTTAAACATGTTCATGAAAACGGTTTTGTTCACTGTGACGTGAAGCTACAAAACATTCTTGTATTTGAAGATGGCAATGTTAAGATTTCGGATTTTGGTCTTGCAAAGGAGAAAGGTTTAAAGAATGATGGAAAATTGGAATGCAGGGGAACTCCGATGTTTATATCGCCGGAAGCAGTGAACGACAATGTTTATGAATCGCCGGCAGACATATGGGCACTTGGTTGCGCGGTAGTGGAGATGGTTACGGGAAAACCTGCATGGAATTTTAGTGGGTCAAATATATGGTCCTTGTTGATTAGAATTGGGGTAGGAGAAGAATTGCCATTGATTCCCGAAGAATTTTCACAAGAAGGAAAAGATTTTCTTCAAAAAATATTCGTGAAGGATCCGTTGAAAAGATGGACAGCAGAGATGCTTTTGAAACACCCTTTTATCTCCGATGATAAAAATGTATCATTGGTGAAAGAGTTAATTAATGAGTCAGAGCTTCAACGACTAGTCGAAGATCAAAGATTTGTTAGATTGGTTAGAATCTGA 891 0.4007 MGWVRGHLLGSGSFATVNLATHTNNSDNFPSITAVKSSDTYYSHLLQNEKQILDRLGSSPHVINCFGDDNTFEDGEECYNIFLEYASGGTLFDQLKNYGGKLPETVVRRYTRSILEGLKHVHENGFVHCDVKLQNILVFEDGNVKISDFGLAKEKGLKNDGKLECRGTPMFISPEAVNDNVYESPADIWALGCAVVEMVTGKPAWNFSGSNIWSLLIRIGVGEELPLIPEEFSQEGKDFLQKIFVKDPLKRWTAEMLLKHPFISDDKNVSLVKELINESELQRLVEDQRFVRLVRI 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00830 296 SUPERFAMILY Protein kinase-like (PK-like) 3 274 IPR011009 -
Trre9g00830 296 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 275 - -
Trre9g00830 296 Gene3D Transferase(Phosphotransferase) domain 1 3 294 - -
Trre9g00830 296 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Trre9g00830 296 Pfam Protein kinase domain 5 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00830 296 ProSiteProfiles Protein kinase domain profile. 3 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00830 296 CDD STKc_MAPKKK 3 263 - -
Trre9g00830 296 SMART serkin_6 3 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00830 296 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00830 Trre-Chr9 6428493 6429466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00830 1 266 MAP Kinase Kinase Kinase AT3G50310 57.818 3.09e-112 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trre9g00830 Pkinase 3.1e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00830 - - gmx:100782937 415.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00830 9 6428493 6429466 Trre9g00830 9 6428493 6429466 ECH
Trre9g00830 9 6428493 6429466 Trre15g03828 15 47915669 47916694 PCT