LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre9g00825	ATGCATGATCATTCCACCGACACAATGAACGACCAACTTTCTAACCAAACATCAATCTTCGGTCTCCGTTTATGGGTTGTCCTCGGCGTCTCCGTGGGTGTCGTCATCGTTCTCCTCCTCTTCCTTATCTCAGTCTGGTTAGCTTTCAAACGTAACAACAAATCAAAAACTATTAAACCTTCCATCATCCCTGATGACTCTAAAGAAATTCAAGAAATCAAACTCGACCTTGTTCCACCTCAACCCGACCCGTTTCCTGAACCCGACCCATTATCATCATCATCTGAACAACAACAACAACATAATAATAATAATCAACTACACCCAGAAGAAGAAACTACTCCGTTAAGTTACAAAAAAATTCAGTTTGAGATAGGTAAAAATCATAGGATATCTTATCCTGAACAACGTGGTTCTGTTATAAGGTCTTCTAATTCTCGTGAACATAGTGGTGAATCTAGACCGTTGGATCAAGTTTCTACTGTTATTCCTCAAGTTTCTCATCTTGGTTGGGGTCATTGGTATACTCTTAGAGAATTAGAAGATGCTACTAATGCTTTTGCTCCTGAGAATGTTATTGGTGAAGGTGGTTATGGAATTGTTTATCATGGTATTTTGAAGGATAATACTAATATTGCAATTAAGAATTTGCTTAATAATAGAGGACAAGCTGAAAGAGAATTCAAGGTTGAAGTGGAAGCTATCGGACGAGTTCGACATAAGAATTTAGTCAGGTTGCTTGGTTATTGTGCTGAAGGAGCTCATAGAATGCTAGTGTATGAGTTTGTTGACAATGGTAACTTGGAGCAATGGTTACATGGTGATGTTGGGCCTTGGAGTCCTCTAACATGGGAGATTCGAATGAACATTATTCTCGGAACGGCTAAAGGTTTGACTTATCTTCACGAGGGGCTAGAACCGAAAGTTGTTCATCGCGATATTAAATCAAGCAACATTTTACTTAATAAGCAATGGAATTCAAAGGTTTCTGATTTTGGCCTTGCAAAACTTCTTAGCCCTGAGAGCAGCTATATTACAACGCGAGTCATGGGTACATTCGGATATGTAGCTCCTGAATATGCAAGTACGGGAATGTTGAACGAACGAAGTGATGTATATAGTTTCGGAATTCTTATTATGGAAGTGATTACAGGCAGAAATCCAGTTGAATATAGTCGTCCTGCAGAAGAGGTGAATTTAGTTGAGTGGCTCAAGAAGATGGTTGGTAACAGAAATCCAGAGGGAGTGTTGGATCCAAAGCTTCCCGAGAAACCAACTTCGAGGGCACTAAAGCGAGCACTTCTTGTAGCCTTACGCTGCACCGACCCTAATGCACAAAAGCGGCCGAAAATGGGGCATGTAATACACATGCTTGAAGCTGAAGATTCACCTTACAAAGAGGAGCGCAGAATTAGAAGGGAGGCAGGCGTAGGAAATTCACCTACCGCCAGAATAGATAGATCGAAAGAGGAGGCGGAGACCGCTGTATCTATTGATGACGGTATGCTTGAAAACGAGAAGTGTAGTGATGAGACAAGATCAAATCATGAAATAGAGAAGCAATAA	1566	0.4074	MHDHSTDTMNDQLSNQTSIFGLRLWVVLGVSVGVVIVLLLFLISVWLAFKRNNKSKTIKPSIIPDDSKEIQEIKLDLVPPQPDPFPEPDPLSSSSEQQQQHNNNNQLHPEEETTPLSYKKIQFEIGKNHRISYPEQRGSVIRSSNSREHSGESRPLDQVSTVIPQVSHLGWGHWYTLRELEDATNAFAPENVIGEGGYGIVYHGILKDNTNIAIKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEFVDNGNLEQWLHGDVGPWSPLTWEIRMNIILGTAKGLTYLHEGLEPKVVHRDIKSSNILLNKQWNSKVSDFGLAKLLSPESSYITTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVITGRNPVEYSRPAEEVNLVEWLKKMVGNRNPEGVLDPKLPEKPTSRALKRALLVALRCTDPNAQKRPKMGHVIHMLEAEDSPYKEERRIRREAGVGNSPTARIDRSKEEAETAVSIDDGMLENEKCSDETRSNHEIEKQ	521

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre9g00825	521	MobiDBLite	consensus disorder prediction	90	112	-	-
	Trre9g00825	521	ProSiteProfiles	Protein kinase domain profile.	187	466	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre9g00825	521	MobiDBLite	consensus disorder prediction	473	521	-	-
	Trre9g00825	521	Gene3D	Transferase(Phosphotransferase) domain 1	263	475	-	-
	Trre9g00825	521	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	309	321	IPR008271	GO:0004672\|GO:0006468
	Trre9g00825	521	MobiDBLite	consensus disorder prediction	134	157	-	-
	Trre9g00825	521	ProSitePatterns	Protein kinases ATP-binding region signature.	193	215	IPR017441	GO:0005524
	Trre9g00825	521	CDD	STKc_IRAK	193	459	-	-
	Trre9g00825	521	MobiDBLite	consensus disorder prediction	503	521	-	-
	Trre9g00825	521	PANTHER	OS01G0323000 PROTEIN	5	473	-	-
	Trre9g00825	521	Gene3D	Phosphorylase Kinase; domain 1	156	262	-	-
	Trre9g00825	521	MobiDBLite	consensus disorder prediction	77	113	-	-
	Trre9g00825	521	FunFam	Probable serine/threonine-protein kinase At1g01540	167	262	-	-
	Trre9g00825	521	SMART	serkin_6	187	466	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre9g00825	521	Coils	Coil	207	227	-	-
	Trre9g00825	521	Pfam	Protein kinase domain	190	455	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre9g00825	521	SUPERFAMILY	Protein kinase-like (PK-like)	162	459	IPR011009	-
	Trre9g00825	521	FunFam	Putative receptor-like serine/threonine-protein kinase	263	473	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre9g00825	Trre-Chr9	6390039	6392886	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre9g00825	168	517	Receptor kinase-like Gene Family	AT4G02010	41.292	1.30e-86	280

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-V	Trre9g00825		Pkinase	1.5e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre9g00825	-		-	gmx:100797726	734.947