Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00823 ATGGCGGATGAAGATGGCTCATCAAGCAGGAAGCGAAGACCAACGAGAGGACCTGATGCCACTGCTCGCAGCCAAGCATTAGAGCGTCTCAAAGCACGCCGATCCGGCGATCGTGGATCTGACACCGCCGGACCTCAAATCAGGTTAGAAAACCCTATCTACGACACAATCCCTGAGGAAGAGTACACCGCACTCGTTGCCAGTCGCCGCGATCAAGCGCGGTCATTCATCGTCGACGATGAAGGCATCGGTTATGGCGACGAAGGCGAAGAAGAGGATTGGTCCAAAGCTGGTTTCTCCCTCTCTGATGATGAATCTGAAGGTGAATCGGAGAAACCTAAACGGAAGAAAGATAATTCTCAAACTAAACGTCCTTCTTCTTCTTCTGCTGCTGCTAAACTCTCAGCCGCTGCTGCTATGATGGGAAGGCAGAGAGTGTCTTCCATGTTCACTTCCGCTGTTTTTAAGAAAAGTAGAGACGATAAGGCTTGCGAGAGTCTTGTCGATGAGGTTCTCAAGGAGTTTGCGCCGGATGAGACTGATAAACTCAGCCGCAGAAAAGTGCAATCGAATTCGTCTTCAATTTCGAATGATGCTGTGCAGATTAAGCACTCTACTGAATCTGTAAGAAGTTCTTTGCACCAAAATTTTGTAGTTGCAAATGTTGATACTGATTCTGTTAAGGTTAATAAGGATAAGGATAATGGATCTAGGTTAGGGTTAGAGCAAAAATGTGAAGTAGAAGTGAAGGAAAGTTTGGGAAATGACGAGCGAATGGTGGTGGAATCTAATGATTGGTCTTATCCGAGTAATGAGGATTTAGTTGAAGAGAAAGTGGCAAAGGTGAAAGAGGATGAAATGGAAGCAAAACCTGTTATTAAAAAGGAGGGTTTTACTTTGAATGCGAAAGTTAATCAAGAGGTGGTGGACCCAAAGTCGTATGCTACTGCTGGTTGGAAGGCAGCGAGGAGTGGTGCTGGTGGAGTTGGGGAAACAAACATTGCTGATTCAAATTCGAATAATCAACAAAACTCCGAGTTCAATTTGGAGCCAGAGGGATCACTTCCTTTCTACATACTCGATGCTTATGAGGAGTATTATGGAGCCAATATGGGTACTCTTTATTTGTTTGGGAAGGTCAAAACAGGGAATTTGTATCAGAGTTGCTGTGTTGTTGTAAAGAACATGCAGAGGTGTGTCTATGCAATTCCAAGTCATCCTTTGCATTCCATCGATGAGATGATAAAGCTTGAGAAAGATGTCCAAGAGTCTCGAGTTTCTCCCGCAGATTTCCGTAAAAAGCTGCAAGATGCAGTATCTGATATAAAGAATGAGATAGCAAAGCATCTGGTGGATCTGGGGGTTTCTACCTTTAGCATGGCACCTGTTAAGAGGAAATATGCATTTGAACGATCTGACATTCCTGCAGGTGAAAATTATGTGGTGAAAATAAATTATCCGTTCAAGGATACAGCGCTTCCAGTAGACCTCAAAGGAGAAAGTTTCTGTGCTCTTCTTGGAGCTCGAAGCAGTGCACTTGAGCTATTTCTGATTAAAAGAAAAATTAAGGGGCCTTCATGGCTACAAGTTTCAAACTTTTCTACCTGCTCAGCTTCCCAAAGGGTTAGCTGGTGCAAATTTGAAGTGACTGTTGACTCTCCTAAAGACATCAGGGTTTCTTCTTCATCTTCCTCAAAAATCACTCTCGTGATTCCTCCTGTGGTTGTCACGGCCATAAACTTGAAAACAACCATAAATGAAAAACAGAACATAAATGAAATTGTATCTGCATCTGTCGTCAGTTGCAATATGGTTAAGATCGACACTCCTATGCTGGCTTCAGAGTGGAAGAGACCAGGAATGCTGACCCATTTTACTGTTATTCGCAAACTTGATGGGAATATATTTCCAATGGGATTCAATACAGAGGTCACAGACAGAAACGTAAAAGCTGGGTCAAATGTTCTTTGTGTTGAGAGCAGTGAAAGAGCTTTGTTAAATCGCCTAATGTTACAATTACACAAGATGGATAGCGATGTTCTTGTTGGACATAATATTTCTGGATTTGACCTGGATGTTCTTCTCCACAGATCTCAGGCTTGCAGGGTACCAAGCAGCATGTGGTCTAAACTGGGCCGTCTCAACCGTTCTACGATGCCTAAGCTTGATAGAAGAGGCAAAACATTTGGTTTTGGAGCTGATCCTGCTATCATGTCTTGTGTTGCCGGTCGGCTTCTTTGTGATACATATTTGTGTTCCCGTGACCTATTAAAGGAGGTTAGTTATTCTTTAACCCACCTTGCAAAAACACAGCTGAACCAGTCTCGGAAGGAAGTTGCCCCACATGACGTTCCAAAAATGTTTCAAACTGCAAAATCCCTGATGGAGCTAATTGAATATGGTGAAACGGATGCATGGTTGTCCATGGAACTCATGTTTTATTTGAGTGTCCTTCCTCTCACACGCCAGTTGACTAATATAAGTGGCAATCTGTGGGGAAAAACTCTTCAGGGTGCCCGGGCACAGAGGGTGGAGTATCTTTTGTTGCATGAGTTCCATAAAAAGAAATATATTGTTCCAGACAAGTTTTCTAATAACGCAAAAGAAACAAAGTTGACTAAACGCAGAGTAACTCATGGCCCCGACAATGGCAACTTTGATGATGCAGATATTAACGATGCAAACTATCATAATGATGCTTCTGAAAGTGATCATAAGAAAAGCAAAAAGGCTGCTTCCTATGCTGGAGGGCTGGTCTTAGAGCCAAAGAAGGGTCTATATGACAAATATATATTACTTCTGGACTTCAACAGTCTATACCCTTCTATCATTCAGGAATATAATATCTGCTTCACTACTGTTGAAAGATCTACAGATGGATCTTTTCCTCGTCTGCCATCCAGTAAAACAACTGGAGTCTTGCCAGAGTTGCTCAAAAAGCTTGTTAAGTGGAGGCGAGATGTGAAGACATGGATGAAGACTTCATCTGGTCTTAAACGCCAGCAACTGGACATTCAGCAGCAAGCACTGAAGCTTACTGCAAACAGTATGTATGGATGCCTGGGATTTTCCAATTCAAGATTTTATGCAAAGCCACTGGCTGAGCTCATAACCCTACAAGGAAGGGAGATTCTACAAAGTACTGTTGATCTTGTTCAAAATAACTTGAATTTAGAGGTGATCTATGGTGATACTGATTCAATAATGGTTTACAGTGGGCTAGATGATATTGCAAAAGCAACTTCAATATCTAAGAAAGTTATTCAAGAGGTCAATAAGAAATATAGGTGCTTAGAAATCGATCTTGATGGTTTGTATAAGAGGATGCTACTTCTCAAGAAAAAGAAATATGCAGCTGTTAAGGTGCAGTTTAAAGATGGCACCCCGTATGAGGTTATTGAACGCAAAGGTCTTGATATTGTCCGCCGTGACTGGAGTTTATTAGCGAAAGATTTAGGAGATTTTTGCTTGACTCAAATTTTGTCGGGAGGGTCATGCGAAGATGTCGTCGAATCAATTCACAACTCTCTCATGAAGGTACAAGAAGAAATGAGGAACGGACAAGTAGCACTAGAAAAATATGTCATTACAAAGACATTAACTAAACCACCCGAAGCATATCCTGATGCCAAAAACCAACCACATGTTCTTGTGGCACAAAGATTGAAGCAACAAGGTTACACCTCTGGTTGCTCTGTTGGTGATACAATTCCTTATATAATTTGCTGTGAACAGGGTGGTAGTTCAGGCAGTGCAACGGGAATTGCTCTACGTGCCAGACATCCTGATGAACTAAAACAAGAACAGGGGACATGGCTAATTGATATTGATTACTATTTGTCACAACAGATTCATCCTGTGGTATCACGTCTTTGTGCATCTATTCAGGGTACAAGCCCTGAAAGACTTGCTGATTGTTTAGGGCTTGACACATCAAAGTTTCAACATAAATCAAGTGAAGCTTTAAGTGACGATCCTACAAGCTCACTCTTGTTTGCTGGTGATGATGAGGAGAGGTATCGGGGATGTGAGCCGCTGGTCTTGTCATGCCCCAGCTGCTCTGTTACATTTGACTGCCCACCTGTGTTCAAATCTATTTGTATGTTGGGAAATGAAAAGCCAACCAGCTTAGGTGTAGAGGAATCTGACTACAATTTCTGGCGCAAGCTGTGCTGTCCCAAATGCTTTGAAAATGGTGTTGGTAGAATTTCTCCTGCAATGATAGCCAATCAGGTCAAACGGCAAGCAGAGAAGTTTGTTTTAATGTATTATAGAGGTTTACTAATGTGTGATGATGAAACATGCAAGCATACAACGCGAAGTGTCAGCTTTCGTTTGGTTGGTGATTCTGAGCGAGGAACTGTTTGTCCAAATTATCCTCGCTGCAATGGGCATCTTAATAGAAAGTACACTGAAGCCGACTTGTACAAGCAGCTCTCATATTTTTGTCATGTGTTTGATACTGTTTGTGGTATAGAAAAGATGGAGGCAAAGTCTAGGATACCGATAGAGAAGGAGTTAATCAAAATTAGGCCAGTAGTCGATCTTGCTGCATCAACAATACAAAAGATCAGGGACCGTTGTGCCTTTGGGTGGGTGAAGCTGCAGGATCTGGTTGTTACAATTTAA 4629 0.4215 MADEDGSSSRKRRPTRGPDATARSQALERLKARRSGDRGSDTAGPQIRLENPIYDTIPEEEYTALVASRRDQARSFIVDDEGIGYGDEGEEEDWSKAGFSLSDDESEGESEKPKRKKDNSQTKRPSSSSAAAKLSAAAAMMGRQRVSSMFTSAVFKKSRDDKACESLVDEVLKEFAPDETDKLSRRKVQSNSSSISNDAVQIKHSTESVRSSLHQNFVVANVDTDSVKVNKDKDNGSRLGLEQKCEVEVKESLGNDERMVVESNDWSYPSNEDLVEEKVAKVKEDEMEAKPVIKKEGFTLNAKVNQEVVDPKSYATAGWKAARSGAGGVGETNIADSNSNNQQNSEFNLEPEGSLPFYILDAYEEYYGANMGTLYLFGKVKTGNLYQSCCVVVKNMQRCVYAIPSHPLHSIDEMIKLEKDVQESRVSPADFRKKLQDAVSDIKNEIAKHLVDLGVSTFSMAPVKRKYAFERSDIPAGENYVVKINYPFKDTALPVDLKGESFCALLGARSSALELFLIKRKIKGPSWLQVSNFSTCSASQRVSWCKFEVTVDSPKDIRVSSSSSSKITLVIPPVVVTAINLKTTINEKQNINEIVSASVVSCNMVKIDTPMLASEWKRPGMLTHFTVIRKLDGNIFPMGFNTEVTDRNVKAGSNVLCVESSERALLNRLMLQLHKMDSDVLVGHNISGFDLDVLLHRSQACRVPSSMWSKLGRLNRSTMPKLDRRGKTFGFGADPAIMSCVAGRLLCDTYLCSRDLLKEVSYSLTHLAKTQLNQSRKEVAPHDVPKMFQTAKSLMELIEYGETDAWLSMELMFYLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHEFHKKKYIVPDKFSNNAKETKLTKRRVTHGPDNGNFDDADINDANYHNDASESDHKKSKKAASYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSTDGSFPRLPSSKTTGVLPELLKKLVKWRRDVKTWMKTSSGLKRQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMVYSGLDDIAKATSISKKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGTPYEVIERKGLDIVRRDWSLLAKDLGDFCLTQILSGGSCEDVVESIHNSLMKVQEEMRNGQVALEKYVITKTLTKPPEAYPDAKNQPHVLVAQRLKQQGYTSGCSVGDTIPYIICCEQGGSSGSATGIALRARHPDELKQEQGTWLIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDTSKFQHKSSEALSDDPTSSLLFAGDDEERYRGCEPLVLSCPSCSVTFDCPPVFKSICMLGNEKPTSLGVEESDYNFWRKLCCPKCFENGVGRISPAMIANQVKRQAEKFVLMYYRGLLMCDDETCKHTTRSVSFRLVGDSERGTVCPNYPRCNGHLNRKYTEADLYKQLSYFCHVFDTVCGIEKMEAKSRIPIEKELIKIRPVVDLAASTIQKIRDRCAFGWVKLQDLVVTI 1542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00823 1542 Pfam DNA polymerase family B 831 1294 IPR006134 GO:0000166|GO:0003677
Trre9g00823 1542 Gene3D - 397 523 - -
Trre9g00823 1542 Gene3D Palm domain of DNA polymerase 900 1125 IPR023211 -
Trre9g00823 1542 SUPERFAMILY Ribonuclease H-like 352 860 IPR012337 -
Trre9g00823 1542 MobiDBLite consensus disorder prediction 89 122 - -
Trre9g00823 1542 CDD POLBc_alpha 906 1310 IPR045846 GO:0003887|GO:1902975
Trre9g00823 1542 Gene3D DNA Polymerase alpha, zinc finger 1334 1527 IPR038256 -
Trre9g00823 1542 FunFam DNA polymerase 572 886 - -
Trre9g00823 1542 FunFam DNA polymerase 1138 1324 - -
Trre9g00823 1542 Pfam DNA polymerase alpha subunit p180 N terminal 27 94 IPR024647 -
Trre9g00823 1542 Gene3D - 357 556 - -
Trre9g00823 1542 SMART polmehr3 572 1074 IPR006172 GO:0000166|GO:0003676|GO:0003887
Trre9g00823 1542 MobiDBLite consensus disorder prediction 1 18 - -
Trre9g00823 1542 MobiDBLite consensus disorder prediction 187 201 - -
Trre9g00823 1542 FunFam DNA polymerase 1333 1528 - -
Trre9g00823 1542 MobiDBLite consensus disorder prediction 1 57 - -
Trre9g00823 1542 FunFam DNA polymerase 397 523 - -
Trre9g00823 1542 FunFam DNA polymerase 972 1021 - -
Trre9g00823 1542 Gene3D - 572 884 IPR036397 GO:0003676
Trre9g00823 1542 MobiDBLite consensus disorder prediction 179 201 - -
Trre9g00823 1542 Gene3D Helix hairpin bin 970 1021 - -
Trre9g00823 1542 CDD DNA_polB_alpha_exo 572 823 - -
Trre9g00823 1542 Gene3D - 1138 1324 IPR042087 -
Trre9g00823 1542 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 19 1541 - -
Trre9g00823 1542 Pfam DNA Polymerase alpha zinc finger 1335 1538 IPR015088 GO:0003887|GO:0006260
Trre9g00823 1542 Pfam DNA polymerase family B, exonuclease domain 387 765 IPR006133 -
Trre9g00823 1542 MobiDBLite consensus disorder prediction 80 136 - -
Trre9g00823 1542 ProSitePatterns DNA polymerase family B signature. 1062 1070 IPR017964 GO:0000166|GO:0003676
Trre9g00823 1542 MobiDBLite consensus disorder prediction 892 908 - -
Trre9g00823 1542 MobiDBLite consensus disorder prediction 870 908 - -
Trre9g00823 1542 PRINTS DNA-directed DNA-polymerase family B signature 931 944 IPR006172 GO:0000166|GO:0003676|GO:0003887
Trre9g00823 1542 PRINTS DNA-directed DNA-polymerase family B signature 1007 1019 IPR006172 GO:0000166|GO:0003676|GO:0003887
Trre9g00823 1542 PRINTS DNA-directed DNA-polymerase family B signature 1060 1068 IPR006172 GO:0000166|GO:0003676|GO:0003887
Trre9g00823 1542 SUPERFAMILY DNA/RNA polymerases 856 1309 IPR043502 -
Trre9g00823 1542 Coils Coil 1088 1108 - -
Trre9g00823 1542 NCBIfam DNA polymerase (pol2) 53 1292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00823 Trre-Chr9 6372297 6383707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00823 5 1540 Core DNA Replication Machinery Family AT5G67100 61.211 0.0 1867
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00823 K02320 - gmx:100798779 2259.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00823 9 6372297 6383707 Trre9g00823 9 6372297 6383707 ECH