Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00819 ATGGCAGATAATACTAATTCCTCACAAGATGAAATCTCTATTTTTCTCCAACAAATTCTCCTCCGTTCATCTTCTTCTTCTTCTTCCATGCCTGGATCCATCAACTCAAACCCACTTCAAGATGGCAACATCTCACCCTTTCATTCCACTTTCACACCAAACCATCCTCTAAATGTTGTCTCTTCATCTTCTATTGCTGGAGGAGGAGGAGGACTCAGTGGTAATGACACTGATGAATATGACTGTGAAAGTGAGGAGGGTGTTGAAGTATTAACTGAAGAAATTCCAAGAAAGTCTGGTGCTTCTAGGAGTTCTTCAAAAAGAAGTAGAGCAGCTGAAGTTCATAACTTGTCTGAAAAGAGAAGAAGGAGTAGGATCAATGAGAAAATGAAGGCTTTACAAAATCTAATTCCTAATTCTAACAAGACTGATAAGGCTTCAATGCTAGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTCCAAGTACAGATGCTGTCATTGAGAAATGGATTGAGTTTGCATCCTATGTGCTTTTCCGAAGGCCTGCATTCTCTGCCATTTTCTCGCATTAGTACGGAGTTGAACGAAGGAAACCGGTCTGCCCCTTTAAACATGCCATCTACTCTGCCTCATCCCCAAGACAATCCGTTGCTCTATGCATCCAATCTACCTAACAAAAACACATTGCCGAGTCAGCCATCAATGTCCTCCTATCCTTCATATGTTAACACCGCAGAAACTTCTTTCAATCTCGAATCCCGTATTCCTGCACAGAAAAAACGTCTTCAACGATCTTCAGAGCCAATAGACGATAAAGACATGTTGCAGCACCAGCAATCAAATCCAATCTATTCTGCTACCAATCTATTAGGTGGTTCTCAAGTTGTCAAAGAATTCGAGCCAAGCACGATGGCTATACCTACTACTAACAATTCATCGCAAACATGTATCACTGGAAGAGATCAGTCAGGAGCGATCATGAGAAATACTGAGGCCAACATTATATTTTCATCGCAGTTAAGTAGGTAA 1032 0.4089 MADNTNSSQDEISIFLQQILLRSSSSSSSMPGSINSNPLQDGNISPFHSTFTPNHPLNVVSSSSIAGGGGGLSGNDTDEYDCESEEGVEVLTEEIPRKSGASRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSLRNGLSLHPMCFSEGLHSLPFSRISTELNEGNRSAPLNMPSTLPHPQDNPLLYASNLPNKNTLPSQPSMSSYPSYVNTAETSFNLESRIPAQKKRLQRSSEPIDDKDMLQHQQSNPIYSATNLLGGSQVVKEFEPSTMAIPTTNNSSQTCITGRDQSGAIMRNTEANIIFSSQLSR 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00819 343 FunFam Basic helix-loop-helix transcription factor 105 168 - -
Trre9g00819 343 Pfam Helix-loop-helix DNA-binding domain 114 160 IPR011598 GO:0046983
Trre9g00819 343 Coils Coil 149 169 - -
Trre9g00819 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 107 169 IPR036638 GO:0046983
Trre9g00819 343 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 7 291 IPR031066 -
Trre9g00819 343 SMART finulus 116 165 IPR011598 GO:0046983
Trre9g00819 343 MobiDBLite consensus disorder prediction 108 123 - -
Trre9g00819 343 CDD bHLH_AtPIF_like 113 172 IPR047265 -
Trre9g00819 343 Gene3D - 105 168 IPR036638 GO:0046983
Trre9g00819 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 110 159 IPR011598 GO:0046983
Trre9g00819 343 MobiDBLite consensus disorder prediction 88 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00819 Trre-Chr9 6335187 6338088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00819 75 292 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 47.534 1.13e-47 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre9g00819 HLH 3.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00819 - - vum:124831111 332.028