Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00812 ATGTGGGATCTGAATGACTCACCTGATCAGAGAAAGGATTATGAATCAGAAGCAGAAGGTTGTTCAATTGATGGTGATGAAGTTGAAAAAGGTAAAAGAGTTGGATCTGTTTCAAATATTTCAAATTCAAGTTCATCTGCTATAGTTATAGAAGATGGATCCGAAGAAGAAGACGGTAACGGTAACGGTAATAACGGATTATTGAAGAAAAAAAGTAGTAAGATATTTGGATTCTCAGTCGATGACGATGATGAAGACGATAGTGAGTGTCCACCGGTGACTAGACAGTTTTTTCCGGTTGAAGATACTGAGATGACAGCGGTGGTGGATTCTACTTCCGGTGGTGGTAGTGGTGGTGGTGGTGGTGGTGGAGGTTCTTCTTCTTCTTTTCCACGTGCCCACTGGGTAGGTGTAAGATTTTGTCAATCGGAAACCGTTAACGGAGGTAAATCAATTGAAAATTCTGTTTCGCAACCGACGAAGAAGAGTCGTAGAGGACCAAGGTCTAGAAGTTCACAGTATAGAGGTGTTACTTTTTACAGAAGAACCGGTCGATGGGAATCTCATATTTGGGATTGTGGAAAACAAGTGTATTTGGGTGGATTTGACACAGCACATGCAGCTGCACGAGCATATGATAGAGCGGCAATTAAGTTTAGAGGAGTAGAAGCAGACATAAACTTCAACATTGAAGATTATGAAGAGGATTTGAAGCAGATGAGCAATTTAACTAAGGAAGAATTTGTGCACGTACTTCGGCGACAAAGTACTGGATTTCCAAGAGGAAGTTCTAAATATAGAGGTGTAACTTTGCACAAATGTGGAAGATGGGAGGCAAGAATGGGTCAATTCTTAGGGAAAAAGTACGTTTATCTGGGTCTATTTGACACCGAGGTTGAAGCTGCAAGGGCTTATGATAAAGCAGCAATTAAATGCAATGGTAAAGAGGCTGTGACCAATTTTGATCCTAGCATCTATGATAATGAGCTTAATTCTGAATCTTCAGGTCACGCTACTGCGGATCACAATTTGGATTTGAGTTTGGGCAGTTCAAGTTCTAAATGTAACAATAATCAAGCAATTGGGAATCACAATACAAATGCCGCCACTGATCAGTATATGGCGCCTGAACCAAATTGGCGGAACGGTGGAATCAGGCCTAAGCCGGTGAATATTTTACCAAAACCATGTGGTATGAGTAACATGGAAGCTTATGTAAGGGATGGATATGGAGAGAATGAAGCCTTGAGGATGTTAAGCCAAACTCATCTTCAATCTCCTGTCACTAATGAAATGCATAGATATGGTCCCTACAGATCACCTGTTGAACACCACCACCCTCAAATGCTTCACAGTTTTCAACATCTTCACCCCTCAAATTTTCATGTATCGAGTAGCAGCAGCAATGGAGGCCGAATTGGAAGTGATTTAACGTTATCAATGTCCGATCAACAAAAGTGGCAAACGGGGCCTCCACATTTGTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCTCAAATAAGACCCTCTTCTTCTTCTCAAGGTTGGCTGCAGAAAAATGGTTTCCACACTCTCATGAGACCCTCTTGA 1593 0.4175 MWDLNDSPDQRKDYESEAEGCSIDGDEVEKGKRVGSVSNISNSSSSAIVIEDGSEEEDGNGNGNNGLLKKKSSKIFGFSVDDDDEDDSECPPVTRQFFPVEDTEMTAVVDSTSGGGSGGGGGGGGSSSSFPRAHWVGVRFCQSETVNGGKSIENSVSQPTKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNSESSGHATADHNLDLSLGSSSSKCNNNQAIGNHNTNAATDQYMAPEPNWRNGGIRPKPVNILPKPCGMSNMEAYVRDGYGENEALRMLSQTHLQSPVTNEMHRYGPYRSPVEHHHPQMLHSFQHLHPSNFHVSSSSSNGGRIGSDLTLSMSDQQKWQTGPPHLLATAAASSGFPPQIRPSSSSQGWLQKNGFHTLMRPS 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00812 530 MobiDBLite consensus disorder prediction 1 69 - -
Trre9g00812 530 MobiDBLite consensus disorder prediction 35 50 - -
Trre9g00812 530 SUPERFAMILY DNA-binding domain 172 230 IPR016177 GO:0003677
Trre9g00812 530 SMART rav1_2 173 235 IPR001471 GO:0003700|GO:0006355
Trre9g00812 530 SMART rav1_2 265 328 IPR001471 GO:0003700|GO:0006355
Trre9g00812 530 MobiDBLite consensus disorder prediction 109 128 - -
Trre9g00812 530 PRINTS Ethylene responsive element binding protein signature 266 277 IPR001471 GO:0003700|GO:0006355
Trre9g00812 530 PRINTS Ethylene responsive element binding protein signature 304 324 IPR001471 GO:0003700|GO:0006355
Trre9g00812 530 SUPERFAMILY DNA-binding domain 264 324 IPR016177 GO:0003677
Trre9g00812 530 ProSiteProfiles AP2/ERF domain profile. 173 229 IPR001471 GO:0003700|GO:0006355
Trre9g00812 530 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 91 429 - -
Trre9g00812 530 MobiDBLite consensus disorder prediction 502 530 - -
Trre9g00812 530 MobiDBLite consensus disorder prediction 504 521 - -
Trre9g00812 530 Gene3D AP2/ERF domain 264 323 IPR036955 GO:0003700|GO:0006355
Trre9g00812 530 Gene3D AP2/ERF domain 172 231 IPR036955 GO:0003700|GO:0006355
Trre9g00812 530 FunFam AP2-like ethylene-responsive transcription factor 172 231 - -
Trre9g00812 530 MobiDBLite consensus disorder prediction 148 162 - -
Trre9g00812 530 Pfam AP2 domain 173 221 IPR001471 GO:0003700|GO:0006355
Trre9g00812 530 Pfam AP2 domain 264 313 IPR001471 GO:0003700|GO:0006355
Trre9g00812 530 CDD AP2 264 324 IPR001471 GO:0003700|GO:0006355
Trre9g00812 530 MobiDBLite consensus disorder prediction 1 33 - -
Trre9g00812 530 MobiDBLite consensus disorder prediction 148 174 - -
Trre9g00812 530 ProSiteProfiles AP2/ERF domain profile. 265 322 IPR001471 GO:0003700|GO:0006355
Trre9g00812 530 FunFam AP2-like ethylene-responsive transcription factor 264 324 - -
Trre9g00812 530 CDD AP2 173 230 IPR001471 GO:0003700|GO:0006355
Trre9g00812 530 MobiDBLite consensus disorder prediction 458 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00812 Trre-Chr9 6246426 6249472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00812 1 361 AP2-EREBP Transcription Factor Family AT4G36920 64.960 1.67e-133 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Trre9g00812 AP2 9.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00812 K09284 - gmx:100786333 754.207