Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00810 ATGGAAGGTGAAAGAGGAAAAGGAGAGAGAAAGAGAAACGGTGGTGTTGTTGTTGAAGGTGGTGGTGGTGGTGGTGGTGGTGCAGCAGTAGAGAGAAGATACAAAGGAATTCGTATGAGAAAGTGGGGTAAATGGGTAGCTGAAATTAGAGAACCAAATAAACGTTCTCGTATTTGGTTAGGTTCTTATTCTACACCTATCGCCGCCGCTAGAGCTTACGACACCGCCGTTTTCTATCTCCGTGGACCTTCTGCTCGTCTTAATTTCCCTGAATTACTCGCCGGCGAAAACAACAACAACAACAATAACGCTGTTGTTACTTCTGATTTATCCGCTGCTTCAATTCGTAAAAAAGCTACTGAAGTTGGTGCTGGGGTTGATGCTCTTCAAGCTACTCTTCATCATCACCATCATAATCATCATCATAATCACAACCACCGTGTTACGCCGCCGCCGCCGGAGTTACTTAACGGTGGTGGTGGTGGTTCTGGTGATTTTGCGGAGCGGGTTGATTTGAATAAGATTCCTGAACCGGAGAGTTCGGATTGTGAATGGGAAGTTAATTGA 567 0.455 MEGERGKGERKRNGGVVVEGGGGGGGGAAVERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPIAAARAYDTAVFYLRGPSARLNFPELLAGENNNNNNNAVVTSDLSAASIRKKATEVGAGVDALQATLHHHHHNHHHNHNHRVTPPPPELLNGGGGGSGDFAERVDLNKIPEPESSDCEWEVN 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00810 188 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Trre9g00810 188 MobiDBLite consensus disorder prediction 136 188 - -
Trre9g00810 188 FunFam Ethylene-responsive transcription factor 2 32 91 - -
Trre9g00810 188 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 29 182 - -
Trre9g00810 188 Pfam AP2 domain 33 82 IPR001471 GO:0003700|GO:0006355
Trre9g00810 188 Gene3D AP2/ERF domain 32 91 IPR036955 GO:0003700|GO:0006355
Trre9g00810 188 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Trre9g00810 188 MobiDBLite consensus disorder prediction 1 29 - -
Trre9g00810 188 PRINTS Ethylene responsive element binding protein signature 72 92 IPR001471 GO:0003700|GO:0006355
Trre9g00810 188 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Trre9g00810 188 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677
Trre9g00810 188 CDD AP2 33 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00810 Trre-Chr9 6213804 6214370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00810 22 186 AP2-EREBP Transcription Factor Family AT5G67190 55.263 4.72e-59 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre9g00810 AP2 5.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00810 K09286 - gmx:100527066 216.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00810 9 6213804 6214370 Trre9g00810 9 6213804 6214370 ECH