Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00806 ATGACAGTTGAACTCATAATGGAATACAGAAACAACAATTTAACACACAAATTCCAAGAGAATGCAGATGCAGAAGCTGCTTCTGGTTTACAAAGCATAGACAAACTCATTAAATTACTATCATCATCACAACAATTATGTTCTTCAATTGAAATTGATCAAATGGACTACAAAACAGTTACTGATGTAGCTGTTTCAAAGTTTAAGAATGTTATTTCACTTTTGAGTCAAAACAGAACAAGAACTGGTCACGCTCGTTTCAGAAGAGCACCTTTACCTTCTTCTACAACACTTTCTGAAACTAGAGTCTACCATGCTACTCCATTACAGCAGATCCCTCCTCTTGTTCCCAAAAGTGGAGAAGTAATTCAGAAGATGAATATCATTGATTTCTCTCATTCCTCTGTTAATAATTCATTCATGTCTTCTTCGTGTTCCTCTGGCCACTGTCATTGTTCAAAGAAGAGAAAAATGAGGTTGAGGAGAGTGGTGAGAGTAGCTGCAATAAGCTTGAAGATGGCTGATATTCCAAATGATGATTATTCTTGGAGGAAGTATGGCCAAAAACCCATTAAAGGATCACCTCATCCAAGGGGCTATTACAAGTGTAGCAATGTAAAAGGGTGTCCAGCTCGGAAACATGTAGAAAGGGCTTTGGATGATTCATCTATGTTGGTAGTTACTTATGAAGGAGAGCACAATCACTCCCTCTCTAGGACTCAAGCTAATAATCTCATCTTAGAATCCTCATGA 753 0.3772 MTVELIMEYRNNNLTHKFQENADAEAASGLQSIDKLIKLLSSSQQLCSSIEIDQMDYKTVTDVAVSKFKNVISLLSQNRTRTGHARFRRAPLPSSTTLSETRVYHATPLQQIPPLVPKSGEVIQKMNIIDFSHSSVNNSFMSSSCSSGHCHCSKKRKMRLRRVVRVAAISLKMADIPNDDYSWRKYGQKPIKGSPHPRGYYKCSNVKGCPARKHVERALDDSSMLVVTYEGEHNHSLSRTQANNLILESS 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00806 250 Gene3D WRKY domain 162 238 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g00806 250 FunFam WRKY transcription factor 65 161 238 - -
Trre9g00806 250 SMART WRKY_cls 177 237 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g00806 250 ProSiteProfiles WRKY domain profile. 172 238 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g00806 250 Pfam Plant zinc cluster domain 141 175 IPR018872 -
Trre9g00806 250 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 26 241 IPR044810 GO:0003700
Trre9g00806 250 SUPERFAMILY WRKY DNA-binding domain 174 237 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g00806 250 Pfam WRKY DNA -binding domain 178 235 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00806 Trre-Chr9 6169331 6171580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00806 1 90 WRKY Transcription Factor Family AT2G24570 41.758 1.80e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre9g00806 WRKY 2.5e-26 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00806 9 6169331 6171580 Trre9g00806 9 6169331 6171580 ECH
Trre9g00806 9 6169331 6171580 Trre15g05226 15 61653199 61654377 PCT
Trre15g03803 15 47436281 47437955 Trre9g00806 9 6169331 6171580 PCT